| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_1118 |
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| Symbol | secF |
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| ID | 7087571 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | + |
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| Start bp | 1315078 |
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| End bp | 1315980 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 643460029 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_002357056 |
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| Protein GI | 217972305 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.377111 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000000101209 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAATA TCAATCTAAC AAAATGGCGT TATGTCTCCA GTGCTATCTC AATTTTATTG
ATGATAACGT CATTAGCCAT CATAGGTGTA AAGGGTTTTA ACTGGGGATT AGACTTTACC
GGTGGTGTGG TGACTGAGGT TCAGCTCGAT AGAAAAATCA CCAGCAGTGA GTTACAACCT
TTGCTTAACG CTGCCTATCA GCAGGAAGTC TCTGTGATCT CGGCCAGTGA GCCGGGCCGT
TGGGTATTAC GCTATGGTGA TATAAAGAGT GCTGATACTG AGCAAAGCAA TGTCGATATT
CAGCAGGCAT TAGCGCCACT TAACTCTGAA GTGCAAGTCC TTAACAGCAG CGTTGTTGGG
CCGCAGATTG GTCAAGAACT GGCGGAGCAG GGTGGGTTAG CGCTGTTAGT TGCTATGCTG
TGTATTTTAG GCTATTTAAG TTATCGCTTC GAGTGGCGAC TCGCATCGGG CGCTTTGTTT
GCGCTGGTAC ACGACGTTGT GTTTGTACTG GCGTTTTTCG CGCTGACGCA GATGGAGTTT
AATTTAACGG TACTGGCGGC TGTGCTGGCG ATTTTAGGCT ATTCGTTAAA TGACTCGATT
ATCATTGCTG ACCGTATCCG TGAATTATTG ATTGCTAAGC CAAAGCTTGC GATTCAAGAA
ATTAATAACC AAGCGATTGT GGCAACATTC TCCCGCACTA TGGTGACGTC AGGGACAACC
TTAATGACGG TCGGTGCGCT GTGGATCATG GGCGGTGGGC CGCTGGAAGG ATTCTCGATT
GCGATGTTTA TCGGTATTTT AACCGGTACA TTCTCATCGA TTTCTGTTGG CACCTCATTG
CCTGAGTTGT TAGGTTTAAC GCCTGAGCAT TATAAGGAAC AAGTGATTTC TGATACGCCT
TAG
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| Protein sequence | MKNINLTKWR YVSSAISILL MITSLAIIGV KGFNWGLDFT GGVVTEVQLD RKITSSELQP
LLNAAYQQEV SVISASEPGR WVLRYGDIKS ADTEQSNVDI QQALAPLNSE VQVLNSSVVG
PQIGQELAEQ GGLALLVAML CILGYLSYRF EWRLASGALF ALVHDVVFVL AFFALTQMEF
NLTVLAAVLA ILGYSLNDSI IIADRIRELL IAKPKLAIQE INNQAIVATF SRTMVTSGTT
LMTVGALWIM GGGPLEGFSI AMFIGILTGT FSSISVGTSL PELLGLTPEH YKEQVISDTP
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