| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_0898 |
|---|
| Symbol | |
|---|
| ID | 7087259 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | - |
|---|
| Start bp | 1050383 |
|---|
| End bp | 1050901 |
|---|
| Gene Length | 519 bp |
|---|
| Protein Length | 172 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 643459812 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002356839 |
|---|
| Protein GI | 217972088 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4968] Tfp pilus assembly protein PilE |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAATA AAAATGCCGG TTTTACCCTG ATTGAACTCG TTGTGGTCAT TATTATTCTA
GGAGTATTAG CCGTAGTTGC TGCACCTAAA TTCATTAATA TACAATCAGA TGCCTATAAG
AGTCAGCTTT CAGGTGCACA GGCTTCGATG AAATCCGCCG TCACCCTATT CAAAGCTAAG
TCGGAAATTG CTAACAGCGG CACCACCAAT CGAGTCGTTT ACGACGGGAT CCGTGGCGAA
AACTACCAAC CTTGGGCTGC CAGCGCCAGC GGTACAGCAC CAAGCGCCGC TTATACTACG
CCGCCAGAGA TCTTTAAGGC TGCAGGGCTC AATGTCGATG AATGGTCCTA TCGAATCCAT
ACTACTGGCG GTACCTACCA AGTCATTGCC ACACCGAAGC AAAAACTGAA CCTTGACACG
CCGACTCAGG CGCAAGTCGA AGCGACAAAT TGCTATATAG ACTACAAGTG GGAGACGACG
GGAATCCCCA CCTATAACAA GGTCGACACA GGTTGCTAG
|
|---|
| Protein sequence | MPNKNAGFTL IELVVVIIIL GVLAVVAAPK FINIQSDAYK SQLSGAQASM KSAVTLFKAK
SEIANSGTTN RVVYDGIRGE NYQPWAASAS GTAPSAAYTT PPEIFKAAGL NVDEWSYRIH
TTGGTYQVIA TPKQKLNLDT PTQAQVEATN CYIDYKWETT GIPTYNKVDT GC
|
|---|
| |