| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_0806 |
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| Symbol | tolC |
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| ID | 7088039 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | - |
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| Start bp | 931050 |
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| End bp | 932357 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 643459717 |
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| Product | outer membrane channel protein |
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| Protein accession | YP_002356747 |
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| Protein GI | 217971996 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000113836 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000000000882186 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAATTTA AGATCCATAA TTTATGCGCA GCATTAACAC TTGCGGCTTC CGCTTCAGCG
GTGCAAGCAG ATGATTTGTT GCAAATTTAT CAACAAGCAC TGACCAGCGA CCCGCTCGTA
TTGCAAGCCC AAGCCCAGCG TAATGGTTTG TTTGAACAAA TCGAACAAAA CCGTGCACCG
CTGTTGCCAA CCATTAGTGC AAACGTCGGT TACGACAAAG CTTGGAATGA TCCGAAGGAT
GATTCAAGCG GTCTAGTAGG TAGCCTGAAA TTAAATCAAG TTATCTATGA TCACAGTGCT
TGGGTCGGTT TAAGCCTTGC TGAGAAAGCC GCTTCTCAAG CTGATTCTGC CTATGCTTCA
GCATTACAAA ACCTGATTAC TCGTATCACT ACAGCCTATT TCAACGTATT AACGGCGAAA
GACAACTACG AGTTCCAAGG TGCAGAAAAA CGCGCGATCG AACGTCAACT TGAACAAACT
AAACAACGTT TTGCTGTTGG TTTAACCGCA ATTACCGATG TGCATGAAGC CCAAGCTCAA
TATGACTTAG CCTCAGCCAC TGAAATTTTA GCTGAAAACA CACTCGCTAA TAGCTATGAA
GCCTTACGTG AAATCACTGG CATCGATCAC AAGACAATTA ACGTGTTAGA TACCAACCGT
TTCTCGGCCG TTACGCCAGC GCCAACATCT TCAAACGAAT GGTTAAAGAT TGCTGAAACC
AATAGCGTCG ATTTGATGAC TCAACGTATC GGTAAAGATA TCGCTCAAGA AACCATTAAG
CTTTATCAAG CAGGCCACAT GCCTTCTTTA AGCTTGAATG CAGGTTACAA CAAAGGTCTT
GAGCAAAAAA CCGGTAGTAT CAATGAGCCT GACTTTGATA ACGTCAGTGT CGGTGTCAAC
TTAAGCATTC CGATTTTCGA AGGCTTTAAA GTGAGCTCAC AGGTTAATCA AGCGCAATTT
CAATATGTTG AAGCGAGTGA AAAACTTGAG CAAGTTTACC GCGGTGTAGT GAAAAACGTC
CGTAATAACT ACAACAACGT AGGCGCATCT ATCAGCTCAA TCAAAGCCTA TGAGCAATCG
GTTATTTCAT CAGAAAGTGC ACTGAAAGCC ACTCAAGCGG GTTTCGAAGT CGGTACCCGT
ACTATCGTTG ACGTATTGAA CCGTACTCGT GACTTGTACG ATTCAAAACG TAAGCTATCA
GATGCACGTT ATAGCTACAT CAACTCGGTC ATTGCCTTGA AGCAAGCAGC GGGTACATTG
AATGAAGATG ACGTGATTGC CATCAACAAT GGCTTAATTG CAGAGTAA
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| Protein sequence | MKFKIHNLCA ALTLAASASA VQADDLLQIY QQALTSDPLV LQAQAQRNGL FEQIEQNRAP
LLPTISANVG YDKAWNDPKD DSSGLVGSLK LNQVIYDHSA WVGLSLAEKA ASQADSAYAS
ALQNLITRIT TAYFNVLTAK DNYEFQGAEK RAIERQLEQT KQRFAVGLTA ITDVHEAQAQ
YDLASATEIL AENTLANSYE ALREITGIDH KTINVLDTNR FSAVTPAPTS SNEWLKIAET
NSVDLMTQRI GKDIAQETIK LYQAGHMPSL SLNAGYNKGL EQKTGSINEP DFDNVSVGVN
LSIPIFEGFK VSSQVNQAQF QYVEASEKLE QVYRGVVKNV RNNYNNVGAS ISSIKAYEQS
VISSESALKA TQAGFEVGTR TIVDVLNRTR DLYDSKRKLS DARYSYINSV IALKQAAGTL
NEDDVIAINN GLIAE
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