Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal223_0514 |
Symbol | |
ID | 7088428 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS223 |
Kingdom | Bacteria |
Replicon accession | NC_011663 |
Strand | + |
Start bp | 586082 |
End bp | 586699 |
Gene Length | 618 bp |
Protein Length | 205 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 643459441 |
Product | MSHA pilin protein MshB |
Protein accession | YP_002356471 |
Protein GI | 217971720 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00061527 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACTA AGCAAACAGG TTTCTCATTA ATAGAGCTTG TGATTGTGAT TGTGATTTTA GGGCTACTCG CTGCAACCGC GATCCCACGA TTTTTAAATG TTACCGATGA TGCTGAAGAC GCCAGTGTTG ACGGTGTCGC CGGTGGTTTA TCGACTGCCG TTAGCTTTGT ACGTTCGCAG TGGGAAGTTG ATGGGCGCCA AAATAGCAGC GTGATCTTGG ATGGTACGTC AGTTTCGCTC GATCCCCGTT TTGGTTATCC TACAGGGACT TCCGTGACGG ATGTGACTGC GATGACGGAT GCGAGTTGCC AACAAGTATT TAATACTGTG CTGCAGAGCG CTCCTCGTAA TGTGCTCTAC ACTCAAGATG CCCGTAATCA ACGTTATACC GTGCGTGTGA TTGATGGTGC AGGTGGTAGT GCTAATTCGA TTACAGGCAC TGTCGTTACT GGTTTAGATT TATGTGTTTA TCACCAAGTG GCTTCACTGG TGATAAATCA AACAACTGGC GTACCCACTC CTACACCGGA TTTATCAACA GCTGGTGCGA AAGGAGTCGT GTATAACCCA GGTACAGGTA AAGTGCTAAG CTTTACCCAA ACGCCATTTG TACCATAG
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Protein sequence | MKTKQTGFSL IELVIVIVIL GLLAATAIPR FLNVTDDAED ASVDGVAGGL STAVSFVRSQ WEVDGRQNSS VILDGTSVSL DPRFGYPTGT SVTDVTAMTD ASCQQVFNTV LQSAPRNVLY TQDARNQRYT VRVIDGAGGS ANSITGTVVT GLDLCVYHQV ASLVINQTTG VPTPTPDLST AGAKGVVYNP GTGKVLSFTQ TPFVP
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