| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_0153 |
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| Symbol | |
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| ID | 7086755 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | + |
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| Start bp | 177207 |
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| End bp | 179327 |
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| Gene Length | 2121 bp |
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| Protein Length | 706 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 643459077 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_002356117 |
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| Protein GI | 217971366 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0244288 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 67 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAACA AAAGGATTCG ACGCAAGCTG ATTGCAGGGA TTGTTGCGGG TGCAGCCATG
TTCTCCTCCC AATTCGCTTG GTCTGAACAG TATGCGGCCA ACTTTAAGGG CACGGATATT
CAAGAGTTTA TCAACATAGT TGGTAAAAAC TTGAACAAGA CCATCATAGT CGACCCGACG
ATCCGCGGTA AAATCAACGT TCGCAGTTAT GATCTGCTTA ACGATGAACA GTATTACCAG
TTTTTCCTCA ACGTCTTACA AGTCTACGGT TATGCCATCG TCGAGATGGA AAATAACGTT
ATCAAAGTCA TCAAAGACAA AGACGCCAAA ACCGCAGCAA TCCGAGTGGC TAATGATGCC
GAACCTGGGA TAGGCGATGA GATGGTCACG CGTATCGTGG CGCTGTATAA CACTGAGGCT
AAGCAATTAG CTCCGCTGTT ACGCCAATTA AATGATAACG CGGGTGGCGG TAACGTAGTG
AACTACGATC CCTCCAACGT CTTGATGTTG TCTGGTCGCG CTGCTGTGGT GAACAAGTTA
GTTGAAATTG TTCGCCGCGT AGATAAACAG GGCGACACCT CAGTACAAGT GGTGCCGTTA
GAGTTCGCCT CCGCCGGTGA AATGGTACGA ATTATCGATA CCCTTTATCG CGCCACGGCT
AACCAATCTC AAATGCCTGG CCAAGCGCCG AAAGTGGTTG CTGACGAACG TATCAACGCT
GTGGTTGTTA GCGGCGACGA AAAGAGCCGC CAACGTGTGG TCGAGCTCAT TCATCGTCTC
GATGCCGAGC AAGCTAGTAC AGGCAACACT AAGGTGCGTT ACTTACGTTA TGCCAAAGCA
GAAGATTTAG TTGAAGTGCT GACAGGTTTT GCCCAGAAAT TAGAGGGCGA AAAAGATCCA
AGTGCTCAAG CTGCAGGTGG TAAACGCCGC AATGAAATCA ATATTATGGC CCATGCTGAG
ACTAACGCTT TAGTGATCAG TGCCGAACCC GATCAAATGC GGACTATCGA GAGCGTGATT
AATCAGCTCG ATATTCGCCG TGCTCAAGTG TTAGTTGAAG CGATTATCGT GGAAGTGGCT
GAGGGCGATA ACGTTGGCTT CGGGGTCCAA TGGGCGGCTA AAGCGGGTGG TGGGACTCAG
TTTAATAACT TAGGCCCAAC CATAGGTGAG ATTGGCGCTG GTGTATGGCA GGCACAGGGG
GAAAAAGGCT CATCAATCAC AACGCTTGAC CCTGAAGGAA AGCCCGTAGT GACCACCAAC
CCAGATAAGC GCGGAGATGT AACGCTACTT GCCCAAGCAT TAGGCAAAGT GAACGGTATG
GCTTGGGGCG TGGCCATGGG TGACTTTGGC GCGCTGATCC AAGCCGTGTC GAGTGACACT
AACTCAAACG TACTGGCGAC ACCGTCAATT ACCACCTTAG ATAACCAAGA AGCGTCTTTC
ATCGTCGGTG ATGAAGTGCC TATTCTGACG GGCTCTACCG CCAGTTCGAG CAACAGCAAC
CCATTCCAAA CCGTTGAACG TAAAGAGGTT GGGGTTAAGC TGAAAGTGGT GCCGCAGATC
AACGAAGGTA ATGCGGTTAA GCTGACGATT GAACAGGAAG TGTCAGGAGT TAACGGTAAC
ACAGGTGTGG ATATTTCCTT TGCTACTCGC CGTTTAACGA CCACTGTTAT GGCTGACTCA
GGTCAAATCG TGGTTCTGGG TGGTTTGATC AACGAAGAAG TACAAGAAAG CATACAAAAA
GTACCATTCT TGGGTGATAT CCCCATCATT GGCCACTTAT TTAAATCTTC TTCGAGCAAA
AAGACCAAGA AAAACCTGAT GATCTTCATC AAACCAACCA TTATCCGTGA TGGCATCACA
ATGGAAGGGA TTGCTGGTCG TAAATATAAC TATTTCAGAG CATTACAACT TGAGCAGCAA
GAACGTGGCG TCAACTTAAT GCCAAATACG AAAGTGCCTG TGTTGGAAGA ATGGAATCAA
TCAGAGTATT TACCGCCAGA AGTTAACGCC ATTTTAGAGC GTTATAAAGA AGGTAAAGGT
TTAGATGCCC AGATGCGCCA AACGGATCCG ACCTTAAAGT CACTGGAAGA AAACAAGAAT
AAAGATAAAA CCAATGAGTG A
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| Protein sequence | MNNKRIRRKL IAGIVAGAAM FSSQFAWSEQ YAANFKGTDI QEFINIVGKN LNKTIIVDPT
IRGKINVRSY DLLNDEQYYQ FFLNVLQVYG YAIVEMENNV IKVIKDKDAK TAAIRVANDA
EPGIGDEMVT RIVALYNTEA KQLAPLLRQL NDNAGGGNVV NYDPSNVLML SGRAAVVNKL
VEIVRRVDKQ GDTSVQVVPL EFASAGEMVR IIDTLYRATA NQSQMPGQAP KVVADERINA
VVVSGDEKSR QRVVELIHRL DAEQASTGNT KVRYLRYAKA EDLVEVLTGF AQKLEGEKDP
SAQAAGGKRR NEINIMAHAE TNALVISAEP DQMRTIESVI NQLDIRRAQV LVEAIIVEVA
EGDNVGFGVQ WAAKAGGGTQ FNNLGPTIGE IGAGVWQAQG EKGSSITTLD PEGKPVVTTN
PDKRGDVTLL AQALGKVNGM AWGVAMGDFG ALIQAVSSDT NSNVLATPSI TTLDNQEASF
IVGDEVPILT GSTASSSNSN PFQTVERKEV GVKLKVVPQI NEGNAVKLTI EQEVSGVNGN
TGVDISFATR RLTTTVMADS GQIVVLGGLI NEEVQESIQK VPFLGDIPII GHLFKSSSSK
KTKKNLMIFI KPTIIRDGIT MEGIAGRKYN YFRALQLEQQ ERGVNLMPNT KVPVLEEWNQ
SEYLPPEVNA ILERYKEGKG LDAQMRQTDP TLKSLEENKN KDKTNE
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