| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_4049 |
|---|
| Symbol | |
|---|
| ID | 7873277 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | - |
|---|
| Start bp | 4446897 |
|---|
| End bp | 4450136 |
|---|
| Gene Length | 3240 bp |
|---|
| Protein Length | 1079 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643700981 |
|---|
| Product | heavy metal efflux pump, CzcA family |
|---|
| Protein accession | YP_002891004 |
|---|
| Protein GI | 237654690 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATGCCC CTGTGACAGA CTCTTCGAAC GTCGTGCCAA CCGACGCGGC AGCCAGACCG
GCAGCACCCG GCCTGCTCGA CCGCGTCATC GACTGGTCGG CGCGCAACGT CTTCCTGGTA
CTGCTGGCCA CGCTGTTCCT GATCGGGGGT GGCGTGTATG CGGTCAAGCA CACGCCGCTC
GACGCGCTGC CCGACCTGTC CGACGTGCAG GTGATCGTCT ACACCGACTA CCCCGGGCAG
GCGCCGCAGG TGGTCGAGGA CCAGGTCACC TATCCGCTCA CCACCTCGAT GCTGGCGGTG
CCGCGCGCGA AGGTGGTGCG CGGCTTCTCG ATGTTCGGCG CGTCCTATGT GTATGTGATC
TTCGAGGACG GCACCGACAT CTACTGGGCA CGCTCGCGCG TGCTGGAGTA CCTGAGTACC
GCAGCGAGCC GCCTGCCGCA GGGCGTGGCG CCGCAGATCG GGCCGGACGC CACCGGCGTG
GGCTGGGTCT ATCAATATGC GGTTCTGGGC AAGGACATGA GCCTGGCCGA CACGCGCAGC
CTGCAGGACT GGTACGTGCG CTACCAGCTC ACCAAGGCGC AGGGCGTGTC CGAGGTGGCG
AGCCTGGGCG GCTTCGTGCG CGAGTACCAG GTCACCGTCG ATCCGCTGCG CCTCGCCGGC
TACGGCATCA CGCTCGATGC GGTGACGCAG GCGATCCGCG CCTCCAACCG CGACGTCGGC
GGCCGGGTGG TGGAGCTCGC CGAGAAGGAA TACATGGTGC GCGGCCGGGG TTACCTGCAA
AGCGTGCAGG ACATCGCCGA CATCGTGCTC AAGGCCGAGC GCGGCACGCC GGTGCGCGTA
GGCGACGTGG CCCGCGTCGA GCTGGTGCCG GCCGAGCGGC GCGGCATTGC CGAGCTGAAC
GGCGAGGGCG AGGTGGCCTC GGGCATCGTG ATGGCGCGCT TCGGCCAGAA CGCACTCGAC
GTGATCGCCA ACGTCAAGGC CAAGATCGCC GAGATCACGC CCGGCCTGCC GGCAGGCGCC
GAGATCGTGC CGGTGTACGA CCGCTCCGAA CTGATCGAGC GCGCGATCGG CAACCTGAAA
TGGACGCTGC TCGAGGAGAG CCTGATCGTC GCCGCGGTGT GCGTGATCTT CCTGCTCCAT
GTGAGGAGCG CGCTGGTGGC CATCATCACG CTGCCGCTCG GCATCCTGTT CGCCTTCATC
GCCATGCGCT CGCTCGGCCT GGGCTCGAAC ATCATGAGCC TGGGCGGCAT CGCGATCGCG
ATCGGGGCGA TGGTCGATGC CGCGATCGTG ATGATCGAGA ACGCGCACAA GCACATCGAG
CGGCTGCCCG CAGGGGCGGA CCAGAAGGCG CGCGGCGCCG CGATCGTGCT CGCGTGCAAG
GAGGTCGGGC CGGCGCTGTT CTTCTCGCTG CTGATCATCA CCGTGTCCTT CCTGCCGGTG
TTCGCACTCG AAGGCCAGGA GGGCCGGCTG TTCTCGCCGC TCGCCTTCAC CAAGACCTTC
GCCATGGCCG GGGCCGCGCT GCTGTCGGTG ACCCTGGTGC CGGTGCTGAT GCTGTTCTTC
GTGCGCGGGC GCATCCTGCC CGAGGCGAAG AACCCGGTGA ACCGGCTGCT GATCTGGCTG
TACCGCCCGA TCATCCAGGG CGTGCTGCGT TTCAAGGTCC TCACGCTCGT GCTCGCCGTG
CTGGCGATGG CCGCGACCGT CGTCCCCGCG CGCCAGATCG GCTCGGAGTT CATGCCGACC
TTGAATGAAG GCACGCTGTT CTACATGCCG GCGGCGCTGC CGGGGATGTC GGTGACCGAG
GCCGGGCGCC TGCTCGCCAC GACGAACCGC ATCATCAAGA CCTTCCCCGA GGTGGAATCC
GTCTACGGCA AGGCCGGCCG CGCCAACACC GCGACCGACC CGGCGCCGCT GGAGATGTTC
GAGACGGTGA TCAACCTGAA GCCGCAGGAT CAGTGGCGGC CTGGGATGAC CACCGACAAG
CTGATCGCCG AGATGGACGC TGCGCTCAAG TTCCCGGGGC TGGCCAACTC ATGGACCATG
CCGATCAAGG CGCGCATCGA CATGTTGAGC ACCGGCATCC GCACCCCGGT GGGGGTGAAG
GTCTTCGGCA AGGACCTGGA GACGCTGGAG AAGGTGGCGC AGGCGGTGGA GGCGGCCGTG
CGCAAGTTGC CGGGCGCGAG CAGCGCCTAC GCCGAGCGCG TGGCCGGTGG CTACTACGTG
GACATCGTGC CGCGCCGCGA CCAGCTCGCG CGCTACGGGC TCACCATCGA CATGGTGCAG
GACGTGATCG CCACCGCGCT CGGCGGCGAG ATGGTGACGA CCACGGTCGA GGGTCTGGAG
CGCTACGGCG TGTCGGTACG CTATGCGCGC GGCTTGCGCG ACGACCCGGC GCGGCTCGCG
TCCGACGTCT TCGTGCCGAC GATGAACGGC CCGATCCCGC TCGGCCAGGT GGCCGAGGTC
AAGCTGACGC GTGGCGCCCC GGGCATCCGC ACCGAGAACG CGCTGCTCGC GGCCTACGTG
TATGTCGACA CCCGCGAGGC CGACCTCGGC GCCTTCGTCA AGCGCGCGCA GCAGGCGGTG
GCCGAGGAAG TCGCGTTCCC GCAGGGCTAT TACGCCACCT GGAGCGGCCA GTTCGAGAAC
ATGGAGCGCG CCAAGGAGAA GATGAAGATC GTCGTGCCGG TGACGCTGGC GCTGATCTTC
GTGCTGCTCT ACCTCAACTT CCGCCGGCTC ACCGAGACCC TGATCGTGAT GCTGTCGGTG
CCCTTCGCGC TGGTGGGCGG GGTGTGGCTG ATGTGGTGGC TGGGCTACCA GATGAGCGTG
GCGGTGGCGG TGGGCTTCAT CGCGCTCGCC GGGGTGGCGG CGGAGACCGG CGTGATCATG
CTGATCTACC TGGACCACGC ATGGAAGGCA GTCTGCGCGC GCAGGCAGGC CGAGGGCCGC
GCGGCCGGCA TCGCTGATCT CTACGCGGCG ATCATGGAAG GCGCGGTCGA GCGCGTGCGG
CCGAAGATGA TGACCGTGGT GGCGATCATG GCCGGCCTGT TGCCCATCAT GTGGAGTACC
GGCACCGGCG CCGAGGTGAT GAGCCGCATC GCCGCGCCGA TGGTGGGCGG CATGGTGTCC
TCGACCTTGC TGACGCTGGC GGTGATCCCG GCGCTGTATG CGCTGGTCAA GCAGTGGGAG
CTGCGCCGAA GCGCCAAGAC AGCACCCGCG CAGGCGCTGG CCACGGTGTC GGATCTGTAA
|
|---|
| Protein sequence | MHAPVTDSSN VVPTDAAARP AAPGLLDRVI DWSARNVFLV LLATLFLIGG GVYAVKHTPL
DALPDLSDVQ VIVYTDYPGQ APQVVEDQVT YPLTTSMLAV PRAKVVRGFS MFGASYVYVI
FEDGTDIYWA RSRVLEYLST AASRLPQGVA PQIGPDATGV GWVYQYAVLG KDMSLADTRS
LQDWYVRYQL TKAQGVSEVA SLGGFVREYQ VTVDPLRLAG YGITLDAVTQ AIRASNRDVG
GRVVELAEKE YMVRGRGYLQ SVQDIADIVL KAERGTPVRV GDVARVELVP AERRGIAELN
GEGEVASGIV MARFGQNALD VIANVKAKIA EITPGLPAGA EIVPVYDRSE LIERAIGNLK
WTLLEESLIV AAVCVIFLLH VRSALVAIIT LPLGILFAFI AMRSLGLGSN IMSLGGIAIA
IGAMVDAAIV MIENAHKHIE RLPAGADQKA RGAAIVLACK EVGPALFFSL LIITVSFLPV
FALEGQEGRL FSPLAFTKTF AMAGAALLSV TLVPVLMLFF VRGRILPEAK NPVNRLLIWL
YRPIIQGVLR FKVLTLVLAV LAMAATVVPA RQIGSEFMPT LNEGTLFYMP AALPGMSVTE
AGRLLATTNR IIKTFPEVES VYGKAGRANT ATDPAPLEMF ETVINLKPQD QWRPGMTTDK
LIAEMDAALK FPGLANSWTM PIKARIDMLS TGIRTPVGVK VFGKDLETLE KVAQAVEAAV
RKLPGASSAY AERVAGGYYV DIVPRRDQLA RYGLTIDMVQ DVIATALGGE MVTTTVEGLE
RYGVSVRYAR GLRDDPARLA SDVFVPTMNG PIPLGQVAEV KLTRGAPGIR TENALLAAYV
YVDTREADLG AFVKRAQQAV AEEVAFPQGY YATWSGQFEN MERAKEKMKI VVPVTLALIF
VLLYLNFRRL TETLIVMLSV PFALVGGVWL MWWLGYQMSV AVAVGFIALA GVAAETGVIM
LIYLDHAWKA VCARRQAEGR AAGIADLYAA IMEGAVERVR PKMMTVVAIM AGLLPIMWST
GTGAEVMSRI AAPMVGGMVS STLLTLAVIP ALYALVKQWE LRRSAKTAPA QALATVSDL
|
|---|
| |