| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_3976 |
|---|
| Symbol | |
|---|
| ID | 7873622 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | - |
|---|
| Start bp | 4372173 |
|---|
| End bp | 4375412 |
|---|
| Gene Length | 3240 bp |
|---|
| Protein Length | 1079 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643700913 |
|---|
| Product | heavy metal efflux pump, CzcA family |
|---|
| Protein accession | YP_002890936 |
|---|
| Protein GI | 237654622 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATGCCC CTGTGACAGA CTCTTCGAAC GTCGTGCCAA CCGACGCGGC AGCCAGACCG
GCAGCACCCG GCCTGCTCGA CCGCGTCATC GACTGGTCGG CACGCAACGT CTTCCTCGTC
CTGCTGGCCA CGCTGTTCCT GATTGGCGGT GGCCTCTACG CGGTCAAGCA CACGCCGCTC
GACGCGCTGC CCGACCTCTC GGACGTGCAG GTCATCGTCT ACACCGACTA CCCCGGCCAG
GCGCCGCAGG TGGTCGAGGA CCAGGTCACC TATCCGCTCA CCACCTCGAT GCTGGCGGTG
CCGCGCGCCA AGGTGGTGCG CGGCTTCTCG ATGTTCGGCG CGTCCTATGT GTATGTGATC
TTCGAGGACG GCACCGACAT CTACTGGGCG CGTTCGCGCG TGCTCGAATA TCTGAGCACC
GCCGCCAGCC GCCTGCCGCA GGGCGTGGCG CCGCAGATCG GGCCGGACGC GACCGGCGTG
GGCTGGGTGT ACCAGTACGC GGTGGTGGGC CGCGACATGA GCCTGGCCGA CACGCGCAGC
CTGCAGGACT GGTATGTGCG CTACCAGCTC ACCAAGGCGC AGGGCGTGTC CGAGGTCGCC
AGCATCGGCG GCTTCGTGCG CGAGTACCAG GTCACCGTCG ATCCGCTGCG CCTCGCCGGC
TACGGCATCA CGCTCGATGC GGTGACGCAG GCGATCCGCG CCTCCAACCG CGACGTCGGC
GGCCGCGTCG TGGAACTCGC CGAGAAGGAA TACATGGTTC GCGGCCGGGG CTACCTGCAA
AGCGTGGACG ATATCGCCGG CATCGTGCTC AAGGCCGAGC GCGGCACGCC GGTGCGGGTT
GGCGACGTCG CCCGAATAGA GCTGGTGCCG GCCGAGCGGC GCGGCATTGC CGAGCTGAAC
GGCGAGGGCG AGGTGGCGTC CGGCATCGTC ATGGCGCGCT TCGGCCAGAA CGCACTCGAC
GTGATCGCCA ACGTCAAGGC CAAGATCGCC GAGATCGCCC CCGGCCTGCC GACGGGCGCG
GAGATCGTGC CGGTCTATGA CCGCTCGGAA CTGATCGAGC GCGCGATCGG CAACCTCAAA
TGGACGCTGC TCGAGGAGAG CCTGATCGTC GCCGCCGTGT GCATCGTCTT TCTGCTCCAT
GTGCGCAGCG CGCTGGTGGC GATCATTACG CTGCCACTGG GCATCCTGTT CGCCTTCATC
GCCATGCGTT CGCTCGGCCT CGGCTCCAAC ATCATGAGCC TGGGCGGCAT CGCGATTGCG
ATCGGGGCGA TGGTCGATGC CGCGATCGTG ATGATCGAGA ACGCGCACAA GCACATCGAG
CGCCTGCCCG CAGGGGCGGA CCAGAAGGCG CGCGGCGCCG CGATCGTGCT CGCGTGCAAG
GAGGTGGGGC CGGCGCTGTT CTTCTCGCTG CTGATCATCA CCGTGTCCTT CCTGCCGGTG
TTCGCGCTCG AAGGCCAGGA GGGGCGGCTG TTCTCGCCGC TCGCCTTCAC CAAGACCTTC
GCCATGGCCG GCGCCGCGCT GCTGTCGGTG ACCCTGGTGC CGGTGCTGAT GCTGTTCTTC
GTGCGCGGGC GCATCCTGCC CGAGGCGAAG AACCCGGTTA ACCGGCTGCT GATCTGGCTG
TACCGGCCGA TCATCCAGGG CGTGCTGCGC TTCAAGGTCC TCACGCTCGT GCTCGCCGTG
CTGGCGATGG CCGCGACCCT CGTCCCCGCG CGCCAGATCG GCTCGGAGTT CATGCCGACT
CTGAACGAAG GCACGCTGTT CTACATGCCG GCGGCGCTGC CGGGCATGTC GGTGACCGAG
GCCGGGCGCC TGCTCGCCAC CACCAACCGC ATCATCAAGA CCTTCCCCGA GGTCGAATCC
GTCTATGGCA AGGCCGGCCG CGCCAACACC GCCACCGACC CGGCGCCGCT GGAGATGTTC
GAGACCGTCA TCAACCTCAA GCCGCAGGAC GAGTGGCGGC CGGGCATGAC CACCGACAAG
CTGATCGCCG AGATGGATGC CGCGCTCAAG TTCCCCGGCC TGGCCAACTC GTGGACCATG
CCGATCAAGG CCCGCATCGA CATGCTCAGC ACCGGCATCC GCACGCCGGT GGGGGTGAAG
GTGTTCGGCA AGGATCTGGA AACCCTGGAG AAGGTAGCGC AGGCGGTGGA AGCCGCCGTA
CGCAAGGTGC CGGGCGCAAG CAGCGCCTAC GCCGAGCGCG TGGCGGGCGG CTACTACGTG
GACATCGTGC CGCGCCGCGA CCAGCTCGCG CGCTACGGGC TCACCATCGA CAGCGTGCAG
GACGTGATCG CCACCGGGCT CGGCGGCGAG ATGGTGACGA CCACGGTCGA GGGCCTGGAG
CGCTACGGCG TGTCGGTGCG TTACGCGCGT GGCCTGCGCG ACGACCCGGT GCGGCTCGCG
TCCGACGTCT ATGTGCCGAC GATGAACGGC CCGATCCCGC TCGGCCAGGT GGCCGAGGTC
AAACTGACGC GCGGCGCACC CGCCATCCGC ACCGAGAACG CGCTGCTGGC GGCCTATGTG
TATGTCGACA CGCGCGAGGC CGACCTCGGC GCCTTCGTCA AGCGCGCGCA GCAGGCGGTG
GCCGAGGAGG TCGAGTTCCC GCAGGGCTAT TACGCCACCT GGAGCGGCCA GTTCGAGAAC
ATGGAGCGTG CCAAGGAGAA GATGAAGATC GTGGTGCCGG TGACGCTGGC GCTGATCTTC
GTGCTGCTCT ACCTCAACTT CCGGCGCCTG ACCGAGACCC TGATCGTGAT GCTGTCGGTG
CCCTTCGCGC TGGTCGGCGG GGTGTGGCTG ATGTGGTGGC TGGGCTACCA GATGAGCGTG
GCGGTGGCGG TGGGCTTCAT CGCGTTGGCG GGTGTTGCGG CGGAGACCGG GGTGATCATG
CTGATCTACC TCGACCATGC CTGGCGCGAG GTGCGGGCGC GCTGCCAAGC CGAGGGCCGC
GAGGCCGGCG TCACCGACCT GTACGAGGCG ATCATGGAAG GCGCGGTCGA GCGTGTGCGC
CCGAAGATGA TGACCGTGGT GGCGATCATG GCCGGCCTGC TGCCGATCAT GTGGAGCACC
GGCACCGGCA GCGAGGTCAT GAGCCGCATC GCCGCGCCGA TGGTGGGCGG CATGGTGTCG
TCGACCGTGC TGACGCTGGC GGTGATTCCG GCGCTGTATG CGCTGGTGAA GCAGTGGGAG
CTGCGCCGCA GCGCCCGGCC AGCGCCGGCG CAGGTTCCAG TGACGGTGTC TAACTTGTAA
|
|---|
| Protein sequence | MHAPVTDSSN VVPTDAAARP AAPGLLDRVI DWSARNVFLV LLATLFLIGG GLYAVKHTPL
DALPDLSDVQ VIVYTDYPGQ APQVVEDQVT YPLTTSMLAV PRAKVVRGFS MFGASYVYVI
FEDGTDIYWA RSRVLEYLST AASRLPQGVA PQIGPDATGV GWVYQYAVVG RDMSLADTRS
LQDWYVRYQL TKAQGVSEVA SIGGFVREYQ VTVDPLRLAG YGITLDAVTQ AIRASNRDVG
GRVVELAEKE YMVRGRGYLQ SVDDIAGIVL KAERGTPVRV GDVARIELVP AERRGIAELN
GEGEVASGIV MARFGQNALD VIANVKAKIA EIAPGLPTGA EIVPVYDRSE LIERAIGNLK
WTLLEESLIV AAVCIVFLLH VRSALVAIIT LPLGILFAFI AMRSLGLGSN IMSLGGIAIA
IGAMVDAAIV MIENAHKHIE RLPAGADQKA RGAAIVLACK EVGPALFFSL LIITVSFLPV
FALEGQEGRL FSPLAFTKTF AMAGAALLSV TLVPVLMLFF VRGRILPEAK NPVNRLLIWL
YRPIIQGVLR FKVLTLVLAV LAMAATLVPA RQIGSEFMPT LNEGTLFYMP AALPGMSVTE
AGRLLATTNR IIKTFPEVES VYGKAGRANT ATDPAPLEMF ETVINLKPQD EWRPGMTTDK
LIAEMDAALK FPGLANSWTM PIKARIDMLS TGIRTPVGVK VFGKDLETLE KVAQAVEAAV
RKVPGASSAY AERVAGGYYV DIVPRRDQLA RYGLTIDSVQ DVIATGLGGE MVTTTVEGLE
RYGVSVRYAR GLRDDPVRLA SDVYVPTMNG PIPLGQVAEV KLTRGAPAIR TENALLAAYV
YVDTREADLG AFVKRAQQAV AEEVEFPQGY YATWSGQFEN MERAKEKMKI VVPVTLALIF
VLLYLNFRRL TETLIVMLSV PFALVGGVWL MWWLGYQMSV AVAVGFIALA GVAAETGVIM
LIYLDHAWRE VRARCQAEGR EAGVTDLYEA IMEGAVERVR PKMMTVVAIM AGLLPIMWST
GTGSEVMSRI AAPMVGGMVS STVLTLAVIP ALYALVKQWE LRRSARPAPA QVPVTVSNL
|
|---|
| |