| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_3837 |
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| Symbol | dapF |
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| ID | 7874079 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thauera sp. MZ1T |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011662 |
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| Strand | - |
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| Start bp | 4230048 |
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| End bp | 4230881 |
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| Gene Length | 834 bp |
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| Protein Length | 277 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 643700779 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_002890803 |
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| Protein GI | 237654489 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0489107 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAACTGC GCTTCACCAA GATGCACGGC CTGGGCAACG ACTTCGTCGT CATCGATGCC
ACGCGTGCGC CGGTCGACCT CACCCCGGCG CGGGTCAAGG CGATCGCCGA CCGCCATTTC
GGCGTCGGCT GCGATCAGCT GCTGGTGGTC GAGCCCGCCG CGCGGCCGGA TGTCGATTTC
CGCTACCGCA TCTTCAACGC CGATGGCGGC GAGGTCGAGC AGTGCGGCAA CGGCGCGCGC
TGCTTCGTGC GCTTCGTGCA TGACAAGGGG CTCACCGACA AGGCCGAAAT CCGTGTCGAG
ACCCGCTCCG GCATCATCGC GCCGCGCCTG CGCGCGGACG GCCTGGTGAC GGTGGACATG
GGCGTGCCGG AGCTGGCGCC GGCGAAGGTG CCGTTCGTGT CCGACTCGGA CGCGGTCGTG
CAGCCTTTGC AGGTGGGCGG CGACACGGTG GCGATCACCG CGGTGTCGAT GGGCAACCCG
CACGCGGTGC AGGTGGTGGC CGACGTCGAT GCCGCGCCGG TGGTGGAGCA GGGCGCGCGG
ATCGAGCGCC ACGAGCGCTT CCCGGCGCGG GTCAATGCCG GCTTCCTGCA GGTGGTCGAT
GCGCACGAGG TGCGTCTGCG CGTGTTCGAG CGTGGCGCCG GCGAGACCCT GGCCTGCGGA
ACCGGCGCCT GCGCGGCGGT GGTGGCGGGC ATCCTGCGCG GCCTGCTGGA GACGCCGGTG
CGGGTGCATA CCCGCGGCGG CGAGCTGGAG ATCGCCTGGG ACGGCCCGGG CACGCCGGTG
CGCATGACCG GACCGGCGGT CACGGTTTTC GAGGGCGAGA TGGAGCTCGC CTGA
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| Protein sequence | MKLRFTKMHG LGNDFVVIDA TRAPVDLTPA RVKAIADRHF GVGCDQLLVV EPAARPDVDF
RYRIFNADGG EVEQCGNGAR CFVRFVHDKG LTDKAEIRVE TRSGIIAPRL RADGLVTVDM
GVPELAPAKV PFVSDSDAVV QPLQVGGDTV AITAVSMGNP HAVQVVADVD AAPVVEQGAR
IERHERFPAR VNAGFLQVVD AHEVRLRVFE RGAGETLACG TGACAAVVAG ILRGLLETPV
RVHTRGGELE IAWDGPGTPV RMTGPAVTVF EGEMELA
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