| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_3500 |
|---|
| Symbol | |
|---|
| ID | 7873006 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | + |
|---|
| Start bp | 3837388 |
|---|
| End bp | 3838326 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 643700440 |
|---|
| Product | periplasmic solute binding protein |
|---|
| Protein accession | YP_002890471 |
|---|
| Protein GI | 237654157 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0803] ABC-type metal ion transport system, periplasmic component/surface adhesin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.639001 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGATTCC CCTACCGCTT GCGCCGCCTG CGCATCCTCG CGGCCTGCGC CGCCCTGCTC
CTGGGCGGCA GCGCCCACGC CCAGGCGCTC GAAGTGGCGA CCAGCTTCAG CATCCTCGGC
GACCTCGTCG CCCAGGTCGG CGGCGAGCGC ATCAAGGTGC GCACCCTGGT CGGTCCCGAC
GAGGACGCCC ACGCCTTCCA GCCGCGTCCC TCGGACGCGC GCGAGATCGG CAAGGCTGCG
CTGGTGGTGG TCAACGGCCT CGGCTTCGAC GACTGGATGA CGCGGCTGGC GCGCGCCGGC
GGATTCAAGG GGGCGGTGGT GGTGGCGAGC GCGGGGATCT CGACGCTGGA GATGAGGCGC
GACGACGGGC ACGACCATGG CCACGATCAT GGCAAGGGCA AGGCGGTCGA CCCGCACGCC
TGGCAGGACG TGGCGAACGT GCGCCGCTAC GTCGCCAACA TCGCCGCCGC CCTCGCCACC
GCCGACCCGG ACGGCGCGGC CATCTACCGC GCCGCGGCCG CACGCTACGA CGGCGAGTTG
CAGGCGCTCG ACGCGGAGAT CCGTGCCGCC TTCGCGGCGC TGCCCGCCGA GCGCCGCAAG
GTGGTGAGTT CGCACGCGGC CTTCGGGTAC TTCGCGCGCG CCTACGACAT CCGCTTCCTG
TCGCCCGTCG GCGTGGCGAA CAACGCCGAG CCCACCGCCA AGGGCGTGGC CGGCCTGATC
CGCCAGCTCG CGGCGGAAAA GGTGCCGGCG GTGTTCATCG AGAACATCGC CGATCCTCGC
CTGATCGAGC GCATCCGCAG CGAAAGCGGC GCGGTCGTGG GCGGCACGCT GTATTCCGAC
GCACTGTCGA AGGCTGACGG CCCGGCGCCC AGCTACGTAC GCATGATGCG CGCCAACCTG
GCGACGCTGC AGAAGGCACT CGCGGCACCC GAGCGCTGA
|
|---|
| Protein sequence | MRFPYRLRRL RILAACAALL LGGSAHAQAL EVATSFSILG DLVAQVGGER IKVRTLVGPD
EDAHAFQPRP SDAREIGKAA LVVVNGLGFD DWMTRLARAG GFKGAVVVAS AGISTLEMRR
DDGHDHGHDH GKGKAVDPHA WQDVANVRRY VANIAAALAT ADPDGAAIYR AAAARYDGEL
QALDAEIRAA FAALPAERRK VVSSHAAFGY FARAYDIRFL SPVGVANNAE PTAKGVAGLI
RQLAAEKVPA VFIENIADPR LIERIRSESG AVVGGTLYSD ALSKADGPAP SYVRMMRANL
ATLQKALAAP ER
|
|---|
| |