Gene Tmz1t_3409 details

Gene Information

• Locus tag: Tmz1t_3409
• Symbol: secD
• ID: 7873900
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thauera sp. MZ1T
• Kingdom: Bacteria
• Replicon accession: NC_011662
• Strand: +
• Start bp: 3728469
• End bp: 3730334
• Gene Length: 1866 bp
• Protein Length: 621 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 643700349
• Product: preprotein translocase subunit SecD
• Protein accession: YP_002890380
• Protein GI: 237654066
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.768129
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACCGCT ATCCCCTCTG GAAGAACCTC CTGATCGGCC TCGTGCTGCT CTGGGGCCTG 
ATCTACACCC TGCCCAACTT CTACGGCGAG GTGCCGGCGG TGCAGGTGTC CAGCGCCAAG 
GCCACGCTCA AGCTCGACAC CGCGGCCACC ACCGACCGCA TCGCCGGTGC GCTCAAGGCG 
GCCGGCATCG AGAACACCGG CATCTTCTCC GACGCCACCA GCGTGCGTGC CCGCTTCAAG 
GACACCGAGA CCCAGCTGCG CGCCAAGGAC GTCATCGAGC AGACCTTCAA CCCCGACGCC 
GCCGACCCGT CCTACGTGGT CGCGCTCAAC CTGCTGTCGG CCTCGCCGAG CTGGCTCACC 
TCGATCCAGG CGCTGCCGAT GTATCTCGGC CTCGACCTGC GCGGCGGGGT GCACTTCCTG 
CTCGAGGTCG ACATGCCGGG TGCGCTGGTC AAGCGCCTCG ATTCGACCAC CGGCGACCTG 
CGCACCCTGA TGCGCGACAA GAGCGTGCGC CACGCCGGCA TCACCCGCGA AGGCAACACC 
GTGGTGATCC GCTTCCGCGA CGCCGCCCAG CGCGAGGCGG GCCGGCGCGC GATCTTCGAC 
AGCACCACCG ACCTGCAGCT CGTCGAGCGC GACGATGCCG CCGACGACCT CAAGCTGGTC 
GCCACGCTGA CGCCGCAGGC GCAGCAGACC ATGCGCGACT TCGCGATCAA GCAGAACATC 
ACCACGCTGC ACAACCGCAT CAACGAGCTC GGCGTCGCCG AGCCGGTGAT CCAGCAGCAG 
GGTGCCGAGC GCATCGTGGT GCAGCTGCCC GGCGTGCAGG ACGTGGCCAA GGCCAAGGAC 
ATCCTCGGCC GCACCGCCAC GCTGGAAGTG CGCATGGTGG ACGACACCCC GGGCGCGATC 
GAGCAGGCGC TCGCCGGCAG CGTGCCCTTC GGCACGGAGC TCTACAACGA GCGTGGCGGC 
TCGCCGCTGC TGGTCAAGAA GCAGGTCGTG CTCACCGGAG ACCGCCTCAC CGACGCCCAG 
CCCGGCTTCG ACGGCCAGAC CAACGAACCC GCGGTACACC TCACGCTCGA TGCCGCCGGC 
GCGCGCATCT TCCGCGACGT CACGCGCGAG AGCGTCGGCA AGCGCATGGC CATCCTGCTG 
TTCGAGAAGG GCAAGGGCGA GGTCGTGACC GCGCCGGTGA TCCGCAGCGA GATCGGCGGC 
GGGCGCGTGC AGATCTCCGG TCGCATGAGC ACCGTCGAGG CCAACGACGT CGCGCTGCTG 
CTGCGCGCCG GCTCGCTGGC GGCGCCGATG GAGATCATCG AGGAGCGCAC CGTCGGCCCA 
AGCCTCGGCG CGGAGAACAT CCAGAAGGGC TTCAACTCGA CGTTGTGGGG CTTCCTCGCG 
ATCGTCGTGT TCATGTGCGG TTACTACATG CTGGTGGGCC TGGTGTCCTC GATCGCGCTC 
GCCGCCAACC TGCTGCTGCT GGTGGCGCTG CTGTCGCTGC TGCAGGCCAC GCTGACCCTG 
CCCGGCATCG CCGCGATGGC GCTGACCCTG GGCATGGCGA TCGACTCCAA CGTGCTGATC 
AACGAGCGCA TCCGCGAGGA ACTGCGCAAC GGCGCCAGCC CGCAGGCGGC CATCGCGGCC 
GGTTACGACC GCGCCTGGGA CACCATCCTC GACTCCAACA TCACCACGCT GATCGCGGGC 
ATCGCGCTGC TGGTGTTCGG CTCCGGTCCG GTGCGCGGCT TCGCGGTGGT GCACTGCCTG 
GGCATCCTGA CCTCGATGTT CAGCGCGATC CTGGTGTCGC GGATGCTGAT CAATTTCATC 
TACGGCCGTC GCCGCAAGGT CGAAAGCCTG TCGATCGGCC AGGTGTGGAA GCCGGATACG 
AAATAA 

 

Protein sequence

MNRYPLWKNL LIGLVLLWGL IYTLPNFYGE VPAVQVSSAK ATLKLDTAAT TDRIAGALKA 
AGIENTGIFS DATSVRARFK DTETQLRAKD VIEQTFNPDA ADPSYVVALN LLSASPSWLT 
SIQALPMYLG LDLRGGVHFL LEVDMPGALV KRLDSTTGDL RTLMRDKSVR HAGITREGNT 
VVIRFRDAAQ REAGRRAIFD STTDLQLVER DDAADDLKLV ATLTPQAQQT MRDFAIKQNI 
TTLHNRINEL GVAEPVIQQQ GAERIVVQLP GVQDVAKAKD ILGRTATLEV RMVDDTPGAI 
EQALAGSVPF GTELYNERGG SPLLVKKQVV LTGDRLTDAQ PGFDGQTNEP AVHLTLDAAG 
ARIFRDVTRE SVGKRMAILL FEKGKGEVVT APVIRSEIGG GRVQISGRMS TVEANDVALL 
LRAGSLAAPM EIIEERTVGP SLGAENIQKG FNSTLWGFLA IVVFMCGYYM LVGLVSSIAL 
AANLLLLVAL LSLLQATLTL PGIAAMALTL GMAIDSNVLI NERIREELRN GASPQAAIAA 
GYDRAWDTIL DSNITTLIAG IALLVFGSGP VRGFAVVHCL GILTSMFSAI LVSRMLINFI 
YGRRRKVESL SIGQVWKPDT K