| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_2527 |
|---|
| Symbol | |
|---|
| ID | 7873966 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | - |
|---|
| Start bp | 2724313 |
|---|
| End bp | 2726274 |
|---|
| Gene Length | 1962 bp |
|---|
| Protein Length | 653 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 643699449 |
|---|
| Product | helicase c2 |
|---|
| Protein accession | YP_002889506 |
|---|
| Protein GI | 237653192 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1199] Rad3-related DNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0816709 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGACC CCGCCCCGAT CTTCGCCGAC GACGGCCCGC TCGCCGCCGC GATCCCCGGT
TTTCGTGCCC GTCCGCAGCA GATCGAGATG GCGCAGAAGA TCGCCGAGGC GCTGCGCGAG
AACCGCGTGC TGGTGGCGGA GGCCGGCACC GGCACCGGCA AGACCTTCGC CTACCTGGTG
CCGGCGCTGC TGGCCGGGGG CAAGGCCATC ATCTCCACCG GCACCAAGAC GCTGCAGGAC
CAGCTCTTCA ACCGCGACCT GCCCACCGTG CGCGCCGCGT TGAAGGTGCC GGTGACGATC
GCGCTGCTGA AGGGGCGCGC CAACTACGTC TGCCACTACC ACCTCGAGCG CAACGCGCGC
GACGGCCGCT TCCTCACCGC GCAGGACGCC GCAGACCTGC GCGCGATCAC GCGCTTCGCC
AGGCTCACGC AGACCGGCGA CAAGGCCGAA TGCACCGACG TGCGCGAGGA CTCGCTGGCC
TGGCTCGCCG CGACCTCGAC ACGCGACAAC TGCCTCGGCC AGGACTGCCC GCACAAGGAC
GAGTGCTTCG TGATGCAGGC GCGGCGCAAC GCGATGGAGG CCGACGTGGT GGTGGTCAAT
CACCACCTCT TCTTCGCCGA CGTGATGTTG CGCGACGAGG GCATGGGCGA GCTGCTGCCG
GCGTGCAACG CGGTGATCTT CGACGAGGCC CACCAGCTCC CCGAGACCGC GAGCCTGTTC
TTCGGCGACA GCGTGTCCAC CGCCCAGGTG CTGGAGCTGG CGCGCGATAC GCGCTCCGAG
ACCGTGGCCG CGGCGCGCGA CTGCGTGGCG ATGATCGACC AGACCCGCAA CCTGGAAAAG
GCCGCACGCG ACCTGCGCCT GGTGTTCGGG CCGGAGAGCG CGCGGCTCTC CGCCGCGCAG
GCCGGCGAGC ACGAGAACTT CGACGTCATG GTCGAGGCGC TGGAGAAGGC GCTCGCCGAC
TTCCACGCGG TCCTCGCCAC CCAGGCCGAG CGCTCCGAGG GCCTGGGCAA CTGCCTGCGC
CGCACCGAGG AGATGTCCGA ACGCCTGGCG AGCTGGCGCA AGCCCGAAGA CAAGGAGCTG
ATCCGCTGGG TCGAGGTCTT CACCCAGTCG CTCGCGCTCA ATGCCACCCC CCTGCACGTG
TCGGACGTGT TCAAGCGCCA GCTCGAAGGC CACCCGCGCG CGTGGATCTT CACCTCGGCG
ACGCTGGCGG TGGGCAAGGC CGACTTCGGT CACTACTGCC GCGAGCTGGG CCTGGCCTGG
ATGGACCCGC CGCCGCTCAC CGCGGTGTGG GGCAGCCCCT TCGACTACGC CGAGCAGGCG
CTGCTGTACG CGCCGGCCGG CATGCCCGAG CCCAACTCGC CCGACTACAC CGAGCGTGTC
GCGAAGGTCG CGCTGCCGCT GATCCGCGCC GCAAGAGGGC GCGCCTTCGT GCTGTGCACC
TCGCTGCGTG CGATGCGCCG CATCCACGAG CTGATCCTCG ACGGGCTTGC GCAGAGCGGT
GACGCGCTGC CGGTGCTGCT GCAGGGCGAG GGTTCGCGCA CCGAGCTGCT CGAGCGCTTC
CGCCGCCTGG GCAACGCGGT GCTGGTGGCG AGCCAGAGCT TCTGGGAGGG CGTCGACGTG
CCGGGCGACG CGCTCTCGCT GGTGGTGATC GACAAGCTGC CCTTCGCGCC GCCCGACGAC
CCGGTGCTGG CGGCGCGCGT CGAGCACATG CAGAAGCAGG GCCTGAGCCC CTTCGTGCAT
CACCAGCTGC CCAAGACCGT GATCAACATG AAGCAGGGCG CCGGGCGCCT GATCCGCAGC
GAGCGCGACC GCGGCGTGCT GTGCATCTGC GACCCGCGCA TGATCGACAA GTCCTACGGC
AAGGTCGTCT GGCGCAGCCT GCCGCCCATG CGCCGCACGC GCGCCGAAGC CGACGCGGTC
GCCTTCCTCG AGAGCCTGCC GCCACCAAGG CAAGCCGGCT GA
|
|---|
| Protein sequence | MSDPAPIFAD DGPLAAAIPG FRARPQQIEM AQKIAEALRE NRVLVAEAGT GTGKTFAYLV
PALLAGGKAI ISTGTKTLQD QLFNRDLPTV RAALKVPVTI ALLKGRANYV CHYHLERNAR
DGRFLTAQDA ADLRAITRFA RLTQTGDKAE CTDVREDSLA WLAATSTRDN CLGQDCPHKD
ECFVMQARRN AMEADVVVVN HHLFFADVML RDEGMGELLP ACNAVIFDEA HQLPETASLF
FGDSVSTAQV LELARDTRSE TVAAARDCVA MIDQTRNLEK AARDLRLVFG PESARLSAAQ
AGEHENFDVM VEALEKALAD FHAVLATQAE RSEGLGNCLR RTEEMSERLA SWRKPEDKEL
IRWVEVFTQS LALNATPLHV SDVFKRQLEG HPRAWIFTSA TLAVGKADFG HYCRELGLAW
MDPPPLTAVW GSPFDYAEQA LLYAPAGMPE PNSPDYTERV AKVALPLIRA ARGRAFVLCT
SLRAMRRIHE LILDGLAQSG DALPVLLQGE GSRTELLERF RRLGNAVLVA SQSFWEGVDV
PGDALSLVVI DKLPFAPPDD PVLAARVEHM QKQGLSPFVH HQLPKTVINM KQGAGRLIRS
ERDRGVLCIC DPRMIDKSYG KVVWRSLPPM RRTRAEADAV AFLESLPPPR QAG
|
|---|
| |