Gene Tmz1t_2280 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmz1t_2280 
Symbol 
ID7083712 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThauera sp. MZ1T 
KingdomBacteria 
Replicon accessionNC_011662 
Strand
Start bp2565863 
End bp2568067 
Gene Length2205 bp 
Protein Length734 aa 
Translation table11 
GC content69% 
IMG OID643699299 
Product(p)ppGpp synthetase I, SpoT/RelA 
Protein accessionYP_002355915 
Protein GI217970681 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0122723 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTATCCG TCACCCACGC CATCTCCCAG GGCGACACCG CCCCCCCGAT CGATCTGCTC 
GCGGCCGGCC TGGAGCCGAC CGAACGCGAG CACATCGAAG CCGCGCTCGA ATGGATCGCC
GACCTCTACG AGGGCAAGGT GCTCGGCACC GGCGAGCCGA CCTGGACGCA CGCGATCGGT
GCCGCGTTGA TCGCGGCCTC GCTGCGTTTG GACGCCGAGA CGCGCGTGGC CGCGCTGTTG
TTCGCAGCCT GGGAGGAACT CGAGGCCCCC GCCGAGGAGA TCGAGGCGCG CTTCGGTCCG
GCGATCACCG CGCTGGTGCG CGGCCTGCAC AAGCTCAACG GCCTGCGCGT GCTCACCCGC
CTCACCACCA GCGCGAGCGC GCCCGAGATC CGCGCGCAGA CCGAAGTCCT GCGCAAGATG
CTGCTGGCGA TGGTCGAGGA TATCCGCGTC GTGCTGGTGC GGCTGGCCTC GCGCACCCAG
ACCCTGCGCT TCTACACCGA CCTGCCGGGC GAGGCCCGCG TCGAGGTCGC GCGCGAGAGC
CTGGACATCT ACGCGCCGCT CGCCAACCGG CTGGGGGTGT GGCAGATCAA GTGGGAGCTG
GAAGATCTCT CCTTCCGCTT CATCGAGCCC GACACCTACA AGCGCATCGC GAAGATGCTC
GACGAGCGTC GGGTGGAGCG CGAGCAGTTC ATCCGCGACT CCATCGAGCG CCTGAAGAGC
GAGCTCGCCG CGGTCGGAAT CGAGGCCGAG ATCACCGGCC GCGCCAAGCA CATCTACAGC
ATCTACAACA AGATGCGCAA GAAGCGGCTC GACTTCTCGC AGGTCTTCGA CATCCGCGCG
CTGCGCGTGC TGGTGCCCGA GATCAAGGAC TGCTACACGG TGCTGGGTAT CGTGCACCAG
ATGTGGCAGC CGATCGCGAA GGAGTTCGAC GACTACATCA CCAAGCCCAA GGGCAACAAC
TACCAGTCGC TGCACACCGC CGTGCTGGCG GGCGACGGGC GCGCGCTCGA GGTGCAGATC
CGCACCTTCG ACATGCACAA GCACGCCGAG CTCGGCGTGG CCGCGCACTG GCGCTACAAG
GAAGGCGCCA GGCAGGGCGG CGACTACGAC GAGAAGATCG CGCTGCTGCG CAGCCTGTTG
TCTTGGCGCG ACGAGGTTAC CGATGCGGCG CACTGGGTGG AGCAGCTCAA GCGCGCCTCG
CTCGACGACA CGCTCTACGT GCTGACGCCG CAGGGCAGGG TGGTCGATCT GCCGCGCGGC
GCCACGCCGG TCGACTTCGC CTACCGCCTG CACACCGACG TCGGCCACCA CTGCCGCGGC
GCCAAGGTCG ACGGCCACCT CATACCCCTG AACACCCAGC TGGAGAGCGG GCAGACGGTG
GAGATCGTCA CCGCCAAGGA GGGCGGCCCC TCGCGCGACT GGCTGGACAC GCGCCAGGGC
TACGTCGCCA CCTCGCGTGC GCGCAGCAAG ATCAAGCAGT ACTTCGCACA ACTGGACGAG
GAGGAGATCC TCTCGCGCGG GCGCAGCTTC GTCACCAAGG AGATGCAGCG CGACGGCCAC
GGCCAGGCCA ACATCGACGG CCTGGCCGAG CGCCTCGGCT TCAAGAACGC CGAGGCGCTG
TACCTGGCCG CCGGGCGTGG CGAGGTGGGC CCGCGCGCGA TGCAGACCGC GCTGCGCGAG
GGCAGCGCCC CCGAGCCGGC GGCGGAGGCC GAACCCGAGT TCGTGGTCAG CCGCAGCCGC
TCGGGCGACA ATCAGGACAA GATCCTGATC GTCGGTGTGG GCAAGCTGAT GACCTCGCTG
TCGCGCTGCT GCAAGCCCGC CCCGCCGGAT GCGATCGAGG GCTTCGTGAC GCGCGGCCGC
GGCATCTCGA TCCACCGCGT CGATTGCGCC GACTTCCAGG ACCTCGCGCG CAAGCACCCC
GAGCGCGTGA TCCCGGCCGA GTGGGGCGAG AAGGCGCACG ACACCCGCAA CGCCCTCTAC
CAGGTCGACA TCAACGTCCA GGCGAGCGAC CGCCAAGGCC TGCTGCGCGA CATCTCCGAG
GTGCTGTCGC GCGAGAAGCT CAACGTCATC GCGGTCAACA CGCTCACCAA GAAGGGCACC
GCCTACATGC GCTTCACCAT GGAGGTGGGC GGCATCAAGC AGGTGCAGCG CGCGATCACG
CTGGTGCGCG AGGTGCCCGG CGTGATCGAC GCTCAGCGCA AGTGA
 
Protein sequence
MVSVTHAISQ GDTAPPIDLL AAGLEPTERE HIEAALEWIA DLYEGKVLGT GEPTWTHAIG 
AALIAASLRL DAETRVAALL FAAWEELEAP AEEIEARFGP AITALVRGLH KLNGLRVLTR
LTTSASAPEI RAQTEVLRKM LLAMVEDIRV VLVRLASRTQ TLRFYTDLPG EARVEVARES
LDIYAPLANR LGVWQIKWEL EDLSFRFIEP DTYKRIAKML DERRVEREQF IRDSIERLKS
ELAAVGIEAE ITGRAKHIYS IYNKMRKKRL DFSQVFDIRA LRVLVPEIKD CYTVLGIVHQ
MWQPIAKEFD DYITKPKGNN YQSLHTAVLA GDGRALEVQI RTFDMHKHAE LGVAAHWRYK
EGARQGGDYD EKIALLRSLL SWRDEVTDAA HWVEQLKRAS LDDTLYVLTP QGRVVDLPRG
ATPVDFAYRL HTDVGHHCRG AKVDGHLIPL NTQLESGQTV EIVTAKEGGP SRDWLDTRQG
YVATSRARSK IKQYFAQLDE EEILSRGRSF VTKEMQRDGH GQANIDGLAE RLGFKNAEAL
YLAAGRGEVG PRAMQTALRE GSAPEPAAEA EPEFVVSRSR SGDNQDKILI VGVGKLMTSL
SRCCKPAPPD AIEGFVTRGR GISIHRVDCA DFQDLARKHP ERVIPAEWGE KAHDTRNALY
QVDINVQASD RQGLLRDISE VLSREKLNVI AVNTLTKKGT AYMRFTMEVG GIKQVQRAIT
LVREVPGVID AQRK