Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tmz1t_2220 |
Symbol | |
ID | 7083652 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thauera sp. MZ1T |
Kingdom | Bacteria |
Replicon accession | NC_011662 |
Strand | + |
Start bp | 2498356 |
End bp | 2501829 |
Gene Length | 3474 bp |
Protein Length | 1157 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 643699240 |
Product | transcription-repair coupling factor |
Protein accession | YP_002355856 |
Protein GI | 217970622 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCCTCT CCCTCGACGC CCTCCTCTCC CGGCTCGCCA CGGTCAAGCT GCCCAAGCCC GGCGGCCGGC TCGAACTCGA GCCGCTCGCC GGCTCGGCAG ACGCCCTCGC CATCGCCCAG CTCGCCAGCC GCGGCCGCAT GCTGGTGGTG ATCACGGCCA ACCCGCTCGA CGCCCAGCGC CTGCAGGACG AGATCGCCTG GGTCGCACCC GGCCTGCGCG CGCACCTGCT GCCCGACTGG GAGACCCTGC CCTACGACAG CTTCTCGCCC CACCAGGACC TGATCTCCGA GCGGCTGTCG ACGCTCTACG CCATCAGCCG CGGCGAGACC GACATCGTGC TGGTGCCCGC CTCCACCGCG CTGTACCGCA TGGCGCCGCC GGGTTTTCTT GCCGCGTACA CCTTTTTCCT CAAACAGGGC GAGAAGCTCG ACGTCGAGCA GTTCAAGGCG CAGATGGCGC TCGCAGGCTA TGCGCACGTC ACCCAGGTGG TGAGCCCGGG CGAGTTCTCG GTGCGCGGCG GGCTGGTGGA CCTGTTCCCG ATGGGTTCGC CGCTGCCCTT CCGTATCGAC CTCTTCGACG ACGAGGTCGA GAGCATCAAG ACCTTCGACC CCGACACCCA GCGCACGGTG TATCCCACCA AGGAGATCCG TCTGCTGCCG GCGCGCGAGT TCCCGCTCGA CGACAAGGGG CGCACGCGCT TTCGCAGCCG CTTCCGCGAG ACCTTCGAGG GCGACCCGAC GCGCGCGTCG ATCTACAAGG ACGTCTCCAA CGGCATCGCC CCCGCCGGCA TCGAGTACTA CCTGCCGCTG TTCTTCGACG AGACCGCGAC GCTGCTGGAC TACCTGCCCG CCGAGACGCC GGTGCTGCTG CACCGCGACG TGCCGGCGGC GATCGCCGAG TTCTGGAAGG ACACGCGCTC GCGCCACGAC CTGTTGAAGG GCGACCGCAG CCGCCCGGTG CTGGCACCCG AGCAGCTCTT CCTGACCGAC GAGGCCTTCT TCATCGCGCT GAAGAACCTG CCGCGCCTGG CGATCGGGGC CGAAGTGGGC GCCAAGGCGG GCGCCGAGCC CGCGGCCGCC CGCACCGACG CGCTCGCCCT GCCCCCGCCC GAGGTCGCGG TCGAGCGCAA GGCCACCGAC CCGCTGCACA AGCTCAAGGC CTTCCTCGAC GGCTTCGACG GTCGCGTGCT GCTGCTGTCG GACTCGCCCG GCCGGCGCGA GACCATGGCC GAGTTCTTCG CCGAGTACGA CGTGCGCCCC GAGGCCACGG CCGATTTCGG CGCCTTCCTG GATTCCGACG CCCGCCTCGC GCTTGGCGTC GCCCCGCTCG CGCGCGGCTT CGTTCTACCG GCTGCAAGGC TCGCGGTGCT GACCGAGACC GAGCTCTACG CCGCCACCGC GCGCAGCCGC GTGCGCCGCG ACGCGCGCAA GGCCGCCACC ATGGAAGGCT GGCTGCGCGA CCTGTCCGAG CTCAAGATCG GCGACCCGGT GGTGCACGTC TCGCACGGCA TCGGCCGCTA CCTGGGCCTC CTCCACATGA ACCTCGGCGA GGGCGACACC GAGTTCCTGC ATCTGGAGTA CAACGGCGGC GACAAGCTCT ATGTGCCGGT GTCGCAGCTG CACGTGATCA CCCGCTACGC CGGCGCCGAC CCCGAGGCGG TCGACCTGCA CCGCCTCGGC TCCGGCCAGT GGGAGAAGGC CAAGAAGAAA GCCGCGATGC AGGTGCGCGA CACCGCCGCC GAACTGCTCG CGCTCTATGC CCAGCGCGCT GCCCGCCCCG GCCACCGCTT CGACTTCAAG CAGCATGACC TCGAAGCCTT CGCCGAGGCC TTCGGCTTCG AGACCACGCC CGACCAGCAG GCCGCCATCG ACGCGGTGGT GGCCGACATG AAATCCGGCC GCCCGATGGA CCGCCTGGTG TGCGGCGACG TCGGCTTCGG CAAGACCGAG GTCGCGCTGC GCGCCGCCTT CATCGCGGTG GCCGACGGCA AGCAGGTGGT GGTGCTGTGC CCGACCACCC TGCTCGCCGA GCAGCACTAC CAGACCTTCG CCGACCGCTT CGCCGACTGG CCGATCAAGC TCGCCGAGCT GTCGCGCTTC AAGTCGGCCA AGGAGCAGGC CGAGGCCCTG CAGCTCCTCG CGGAGGGCAA GGTCGACATC ATCATCGGCA CCCACCGTTT GCTGCAGAAG GACGTGATCT TCAAGCGCCT CGGCCTGGTG ATCATCGACG AGGAGCACCG CTTCGGCGTG CGCCAGAAGG AGGCCTTGAA GCAATTGCGC TCCGAGGTCG ACATCCTGAC CCTGACCGCC ACGCCGATCC CGCGCACCCT GGGCCTGGCG ATGGAGGGCC TGCGCGAGTT CTCGGTGATC GCCACCGCGC CGCAGAAGCG CCTGGCGATC AAGACCTTCG TCCAGCCCTC CAGTCGCGGC CTGATCCGCG AGGCGGTGCT GCGCGAGTTC AAGCGCGGCG GCCAGGTTTA CTTCCTGCAC AACGAGGTCG ACACCATCGA CAACATGAAG GACGACCTCG AGGAGCTGCT GCCCGAGGCG CGCATCGTCG TCGGCCACGG GCAATTGCCC GAGCGCGAGC TCGAACGCGT GATGCGCGAC TTCACCCAGC AGCGCGCCAA CCTGCTGCTG TGCACCACCA TCATCGAGAC CGGCATCAAC ATCCCCACCG CCAACACCAT CATCATCAAC CGCGCCGACC GCTTCGGCCT GGCGCAGCTG CACCAGCTGC GCGGCCGCGT CGGGCGCAGC CACCACCAGG CCTACGCCTA CCTGCTGACC CAGCCGGGCG CCAAGCCCAG CGCGCAGGCG CAGAAAAGGC TCGAAGCCAT TGCGATGATG GAAGACCTCG GCTCCGGCTT CTACCTGGCG ATGCACGACC TCGAGATCCG CGGCGCCGGC GAGGTGCTGG GCGAGAACCA GTCGGGCGAG ATCCAGCAGG TCGGCTTCAG CCTGTACACC GAGATGCTCA AGCGTGCGGT CAAGGACCTG CAGGCCGGCA AGGAGCCCGA CCTGTCGCAG CCGCTGGAGG TCGTCTCCGA GATCAACCTG CACACCCCGG CGCTGCTGCC CACCGACTAC TGCCCCGACG TGCAGGAGCG CCTGACGCTG TACAAGCGCC TGGCCAACTG CGAGATGGAA GAAGATTTGC GTGCGCTGCA GGAAGAGCTC ATCGACCGCT TCGGCGAGCT CCCGGCGCAG ACCGCCGCGC TGATCGAGAC CCACCGCCTG CGCATGCTGG TGAAGGACTA CGGGGTGCAC AAGCTCGATG CGTCCGATGC GCAGATCAGC GTGCAGTTCG CCAAGGACGC GCCGATCGAC CCGGTCAAAG TCATCTTCCT GATCCAGAAG GACCGCAGCA CCAAGATGGC CGGCCCCGAG AAGCTCGTGC GCCGTGCCAG CCTGCCCAAC CTCAAGGAGC GCGTGAAGGC GGTGAAGGAC CTGCTCGAGG CGGTGAAGGC CTGA
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Protein sequence | MSLSLDALLS RLATVKLPKP GGRLELEPLA GSADALAIAQ LASRGRMLVV ITANPLDAQR LQDEIAWVAP GLRAHLLPDW ETLPYDSFSP HQDLISERLS TLYAISRGET DIVLVPASTA LYRMAPPGFL AAYTFFLKQG EKLDVEQFKA QMALAGYAHV TQVVSPGEFS VRGGLVDLFP MGSPLPFRID LFDDEVESIK TFDPDTQRTV YPTKEIRLLP AREFPLDDKG RTRFRSRFRE TFEGDPTRAS IYKDVSNGIA PAGIEYYLPL FFDETATLLD YLPAETPVLL HRDVPAAIAE FWKDTRSRHD LLKGDRSRPV LAPEQLFLTD EAFFIALKNL PRLAIGAEVG AKAGAEPAAA RTDALALPPP EVAVERKATD PLHKLKAFLD GFDGRVLLLS DSPGRRETMA EFFAEYDVRP EATADFGAFL DSDARLALGV APLARGFVLP AARLAVLTET ELYAATARSR VRRDARKAAT MEGWLRDLSE LKIGDPVVHV SHGIGRYLGL LHMNLGEGDT EFLHLEYNGG DKLYVPVSQL HVITRYAGAD PEAVDLHRLG SGQWEKAKKK AAMQVRDTAA ELLALYAQRA ARPGHRFDFK QHDLEAFAEA FGFETTPDQQ AAIDAVVADM KSGRPMDRLV CGDVGFGKTE VALRAAFIAV ADGKQVVVLC PTTLLAEQHY QTFADRFADW PIKLAELSRF KSAKEQAEAL QLLAEGKVDI IIGTHRLLQK DVIFKRLGLV IIDEEHRFGV RQKEALKQLR SEVDILTLTA TPIPRTLGLA MEGLREFSVI ATAPQKRLAI KTFVQPSSRG LIREAVLREF KRGGQVYFLH NEVDTIDNMK DDLEELLPEA RIVVGHGQLP ERELERVMRD FTQQRANLLL CTTIIETGIN IPTANTIIIN RADRFGLAQL HQLRGRVGRS HHQAYAYLLT QPGAKPSAQA QKRLEAIAMM EDLGSGFYLA MHDLEIRGAG EVLGENQSGE IQQVGFSLYT EMLKRAVKDL QAGKEPDLSQ PLEVVSEINL HTPALLPTDY CPDVQERLTL YKRLANCEME EDLRALQEEL IDRFGELPAQ TAALIETHRL RMLVKDYGVH KLDASDAQIS VQFAKDAPID PVKVIFLIQK DRSTKMAGPE KLVRRASLPN LKERVKAVKD LLEAVKA
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