| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_2190 |
|---|
| Symbol | |
|---|
| ID | 7085543 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | - |
|---|
| Start bp | 2469293 |
|---|
| End bp | 2471374 |
|---|
| Gene Length | 2082 bp |
|---|
| Protein Length | 693 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 643699210 |
|---|
| Product | DNA ligase, NAD-dependent |
|---|
| Protein accession | YP_002355826 |
|---|
| Protein GI | 217970592 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
|---|
| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0728062 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACCTGT TCGCCGAAGA CGGCCGCGGC GAGACCGCGG CCGACGCCGC CGCACGCGCA
GCGGCCCTGC GCGCCGAGAT CGCGCGTCAC GACCATGCCT ATTACGTGCT CGACGCGCCG
ACGATTCCCG ACGCCGAGTA CGATCGCCTG TTCCGCGAGC TGCAGGCCAT CGAGCGGGCG
TACCCGGCGC TGCGCAGTGC CGACTCGCCG ACACAGCGGG TGGGCGGCAA GGCGCTCGCG
CAGTTCGCCA CGGTGCGCCA CCGCGTGCCC ATGCTGTCGA TCTCCACCGA GACCGACACC
GAGGCGAGCG GGGCATTCGC GTTCGATGCG CGCGTGCGCC GCGCGCTCGG CCTCGACGAG
GACGATGCGG CGGTGGCCTA CGCCGCCGAG CTCAAGTTCG ACGGCCTCGC GATCAGCCTG
CGCTACGAGG ACGGCGTGCT CGTGCAGGCC GCTACCCGCG GCGACGGCGA GACCGGGGAG
GACGTCACGA GCAACGTGCG CACGGTGAAG GCGATCCCGC TGCGCCTGCT CGGCGAGGCG
CCGCCGGTGC TGGAGGTGCG CGGCGAGATC TACCTGCGCC GCGATGACTT CGAGCGCCTC
AACGCGCGCC AGGCGGAGGC CGGCGAGAAG ATCTTCGTCA ATCCGCGCAA CGCCGCCGCC
GGCAGCATCC GCCAGCTCGA CCCCGGCATC GCCGCGCGCC GGCCCTTGTC CTTCTACGCC
TACGGGCTGG GCGAGGTCGC CGGTTGGACG CTGCCCGCGA CCCAGACCGA GGTGCTGGAC
GCGCTCGCCG CCTTCGGCCT GCCGGTGTGC GGCCACCGCG CGCAGGTGCG CGGCGCAGAG
GGGCTGGCGG CCTTCCACGC ACGCATCGGC GCACTGCGCG ACACGCTGCC CTTCGACATC
GACGGCGTCG TCTACAAGGT CGACGCGCTC GCGCTGCAGC AGCAGCTCGG CTTCGTCACC
CGCGAGCCGC GCTGGGCGGT GGCGCACAAG TACCCTGCTC AGGAGGCGGT GACGCTGCTG
CGCGACATCG AGGTGCAGGT CGGCCGCACC GGCGCGCTGA CCCCGGTGGC GCGCCTCGAG
CCGGTCTTCG TCGGCGGCGT CACGGTCACC AACGCCACGC TGCACAACCA GGACGAGATC
GACCGCAAGG ACGTGCGCAT CGGCGACTGG GTGATCGTGC GTCGTGCAGG CGACGTGATC
CCCGAGGTGG TGGCGCCGAT CCTGGAGCGC CGCGGCGGCG AACTGCCGCG CTTCGTGCTG
CTCGACCGGT TCCCCACCTG TCCGGTGTGC GGTTCGCATG TGGTGCGCGG CGAAGACGAA
GCGGTCGCGC GCTGCACCGG CGGGTTGTTC TGCCCGGCCC AGCGCAAGCA GGCGCTGCTT
CACTTCGCCG GCCGGCGTGC GATGGACATC GAAGGATTGG GCGACAAGCT GGTCGATCAG
CTTGTGGACG CGGCGATCGT GAAGACGCCG GTCGATCTCT ACCGCCTCGG CGTGCTCGCG
CTCGCCAACC TCGAGCGCAT GGGCGAGAAG TCGGCGCAGA ATCTGCTGAT GGCGATCGAG
AAGAGCCGTG GCACCACGCT GGCGCGCTTC ATCTTCGCGC TCGGCATCCG CAACGTCGGC
GAGGCCACCG CGCGCGACCT CGCACGCCAC TTCGGCAAGC TCGACGCGCT GATCGCGGCC
GACGTCGATG CCCTGCAGCA GGTGCCCGAC GTGGGGCCCA TCGTGGCGAA ATGCATCGCC
GAGTTCTTCG CCGAGCCGCA CAATCGCGAG GTGATCGAGC AGTTGCGTGC CGCCGGCGTG
CATTGGGCCG AGGGCGAGCC GCAGGGCTCG GTGGCCGGCG CACTCGCGGG CAAGACCTTC
GTGCTCACCG GCACGCTGCC GACCCTGAGC CGCGACGAGG CCAAGGCGCG GATCGAGGCC
CGCGGCGGCA AGGTCGCCGG CTCGGTGTCG AAGAAGACGC ACTACGTGGT CGCCGGCGCC
GAGGCGGGCT CCAAGCTCGA CAAGGCGCAG GCGCTCGGGC TCGCCATCCT CGACGAGGAC
GGGCTGCGCG TGCTGCTGAA CGAAACGGAT ACAAACGCTT GA
|
|---|
| Protein sequence | MDLFAEDGRG ETAADAAARA AALRAEIARH DHAYYVLDAP TIPDAEYDRL FRELQAIERA
YPALRSADSP TQRVGGKALA QFATVRHRVP MLSISTETDT EASGAFAFDA RVRRALGLDE
DDAAVAYAAE LKFDGLAISL RYEDGVLVQA ATRGDGETGE DVTSNVRTVK AIPLRLLGEA
PPVLEVRGEI YLRRDDFERL NARQAEAGEK IFVNPRNAAA GSIRQLDPGI AARRPLSFYA
YGLGEVAGWT LPATQTEVLD ALAAFGLPVC GHRAQVRGAE GLAAFHARIG ALRDTLPFDI
DGVVYKVDAL ALQQQLGFVT REPRWAVAHK YPAQEAVTLL RDIEVQVGRT GALTPVARLE
PVFVGGVTVT NATLHNQDEI DRKDVRIGDW VIVRRAGDVI PEVVAPILER RGGELPRFVL
LDRFPTCPVC GSHVVRGEDE AVARCTGGLF CPAQRKQALL HFAGRRAMDI EGLGDKLVDQ
LVDAAIVKTP VDLYRLGVLA LANLERMGEK SAQNLLMAIE KSRGTTLARF IFALGIRNVG
EATARDLARH FGKLDALIAA DVDALQQVPD VGPIVAKCIA EFFAEPHNRE VIEQLRAAGV
HWAEGEPQGS VAGALAGKTF VLTGTLPTLS RDEAKARIEA RGGKVAGSVS KKTHYVVAGA
EAGSKLDKAQ ALGLAILDED GLRVLLNETD TNA
|
|---|
| |