Gene Tmz1t_2158 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmz1t_2158 
Symbol 
ID7085511 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThauera sp. MZ1T 
KingdomBacteria 
Replicon accessionNC_011662 
Strand
Start bp2431939 
End bp2432772 
Gene Length834 bp 
Protein Length277 aa 
Translation table11 
GC content67% 
IMG OID643699178 
Productsqualene synthase HpnD 
Protein accessionYP_002355794 
Protein GI217970560 
COG category[I] Lipid transport and metabolism 
COG ID[COG1562] Phytoene/squalene synthetase 
TIGRFAM ID[TIGR03465] squalene synthase HpnD 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCCAC ACGACTACTG CCAGGACAAG GCCGCCAAGA GCGGCTCGAG CTTCTACTAC 
AGCTTCATGT TCCTGCCCGC CGAGCGCCGC CAGGCGATCA CCGCCCTGTA CGCTTTCTGC
CGCGAGGTGG ACGACGTGGT CGACGAATGC CACGACCTCT CGCTCGCGCA GACCAAGCTC
GAGTGGTGGC GCCAGGAGGT CGGGCGCATC TACGGCGGCC TGCCCACCCA CCCTGTCGGA
CATGCGCTCA AGGACGTGCT GAAGGGCTTC CGCCTGCCGC AGGAGCAGCT GCTCGAGATC
ATCGACGGCA TGGCGATGGA CCTGTCGCAG ACGCGCTACC TCGACTTCAA GGGCCTGCAG
CTCTACTGCT ACCGCGTCGC CAGCGTCGTC GGCCTGCTCG CTGCCGAGAT CTTCGGCTAC
CAGGACCGCC AGACGCTCAA GTATGCGCAC GACCTCGGGC TGGCCTTCCA GCTCACCAAC
ATCATCCGCG ACGTCGGCGA GGACGCCCGC CGCGGGCGCA TCTACCTGCC GATCGAGGAC
CTGCAGCGCT TCAACGTGCC CGCCAAGGAT CTCCTCGAGG CGCGCTACTC CGACGCCTTC
CGCGAGCTCA TGGCCTTCCA GGCCGAGCGC GCGGAGAAGT TCTACGACCA GGCCTTCGCC
CAGTTGCCCG CGATCGACCG CAAGGCGCAG CGCCCCGGCC TGGTGATGGC GGCGATCTAC
CGCACCCTGC TGCGCGAAAT CGCGCGCGAC GGTTTCCTGG TGCTCGACCG CCGCACCTCC
CTGACCCCGC TGCGCAAGGT GTGGCTCGCG GGCACGACCT GGTTCCGCGC ATGA
 
Protein sequence
MNPHDYCQDK AAKSGSSFYY SFMFLPAERR QAITALYAFC REVDDVVDEC HDLSLAQTKL 
EWWRQEVGRI YGGLPTHPVG HALKDVLKGF RLPQEQLLEI IDGMAMDLSQ TRYLDFKGLQ
LYCYRVASVV GLLAAEIFGY QDRQTLKYAH DLGLAFQLTN IIRDVGEDAR RGRIYLPIED
LQRFNVPAKD LLEARYSDAF RELMAFQAER AEKFYDQAFA QLPAIDRKAQ RPGLVMAAIY
RTLLREIARD GFLVLDRRTS LTPLRKVWLA GTTWFRA