Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tmz1t_2158 |
Symbol | |
ID | 7085511 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thauera sp. MZ1T |
Kingdom | Bacteria |
Replicon accession | NC_011662 |
Strand | + |
Start bp | 2431939 |
End bp | 2432772 |
Gene Length | 834 bp |
Protein Length | 277 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 643699178 |
Product | squalene synthase HpnD |
Protein accession | YP_002355794 |
Protein GI | 217970560 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1562] Phytoene/squalene synthetase |
TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATCCAC ACGACTACTG CCAGGACAAG GCCGCCAAGA GCGGCTCGAG CTTCTACTAC AGCTTCATGT TCCTGCCCGC CGAGCGCCGC CAGGCGATCA CCGCCCTGTA CGCTTTCTGC CGCGAGGTGG ACGACGTGGT CGACGAATGC CACGACCTCT CGCTCGCGCA GACCAAGCTC GAGTGGTGGC GCCAGGAGGT CGGGCGCATC TACGGCGGCC TGCCCACCCA CCCTGTCGGA CATGCGCTCA AGGACGTGCT GAAGGGCTTC CGCCTGCCGC AGGAGCAGCT GCTCGAGATC ATCGACGGCA TGGCGATGGA CCTGTCGCAG ACGCGCTACC TCGACTTCAA GGGCCTGCAG CTCTACTGCT ACCGCGTCGC CAGCGTCGTC GGCCTGCTCG CTGCCGAGAT CTTCGGCTAC CAGGACCGCC AGACGCTCAA GTATGCGCAC GACCTCGGGC TGGCCTTCCA GCTCACCAAC ATCATCCGCG ACGTCGGCGA GGACGCCCGC CGCGGGCGCA TCTACCTGCC GATCGAGGAC CTGCAGCGCT TCAACGTGCC CGCCAAGGAT CTCCTCGAGG CGCGCTACTC CGACGCCTTC CGCGAGCTCA TGGCCTTCCA GGCCGAGCGC GCGGAGAAGT TCTACGACCA GGCCTTCGCC CAGTTGCCCG CGATCGACCG CAAGGCGCAG CGCCCCGGCC TGGTGATGGC GGCGATCTAC CGCACCCTGC TGCGCGAAAT CGCGCGCGAC GGTTTCCTGG TGCTCGACCG CCGCACCTCC CTGACCCCGC TGCGCAAGGT GTGGCTCGCG GGCACGACCT GGTTCCGCGC ATGA
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Protein sequence | MNPHDYCQDK AAKSGSSFYY SFMFLPAERR QAITALYAFC REVDDVVDEC HDLSLAQTKL EWWRQEVGRI YGGLPTHPVG HALKDVLKGF RLPQEQLLEI IDGMAMDLSQ TRYLDFKGLQ LYCYRVASVV GLLAAEIFGY QDRQTLKYAH DLGLAFQLTN IIRDVGEDAR RGRIYLPIED LQRFNVPAKD LLEARYSDAF RELMAFQAER AEKFYDQAFA QLPAIDRKAQ RPGLVMAAIY RTLLREIARD GFLVLDRRTS LTPLRKVWLA GTTWFRA
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