Gene Tmz1t_1985 details

Gene Information

• Locus tag: Tmz1t_1985
• ID: 7083740
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thauera sp. MZ1T
• Kingdom: Bacteria
• Replicon accession: NC_011662
• Strand: -
• Start bp: 2243968
• End bp: 2245887
• Gene Length: 1920 bp
• Protein Length: 639 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 643699010
• Product: diguanylate cyclase with PAS/PAC sensor
• Protein accession: YP_002355632
• Protein GI: 217970398
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2199] FOG: GGDEF domain; [COG3614] Predicted periplasmic ligand-binding sensor domain
• TIGRFAM ID: [TIGR00229] PAS domain S-box; [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.267533
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTCGACC GCAGCACGGC CGCCTGGCTC GCGCTCATCC TGGGCCTGCT CCTGACGGCG 
GTGCTGTGGA GATACGTCGA CGCCCATCTC GAGGAGCGGA CGCGCGACCG CTTCGCCACG 
CACGCCACGC TGGCCCGCGA CAACCTGCTC TCGCGCGTGC AGGCCTACGA GCAGGTGCTG 
CATGGCGGCG CCGCGCTGTT CGCCGCGAGC GACCACGTCG GCCGGTCCGA GTGGGCGGCC 
TATGTCGCAG CCCTCCACCT CGAGCGCTCG CTGCCCGGTA TCCAGGGCAC CGGCTTCACC 
GTCATGCTGC TCCCGGCGCA GCTGGAGGCC CACGTCGCGG CGGTGCGCGC CGAAGGCTTC 
CCCGACTACA CGGTACATCC GCCCGGGTAT CGCGACCGCT ACAGCAGCAT CGTCTACCTG 
GAGCCCTTCG ACGGGCGCAA CCGGCGCGCC TTCGGCTACG ACATGTATTC CGAGCCGGTG 
CGCCGCGAGG CCATGGAGCG CGCGCGCGAC ACGGGAACGG CCGCGCTCAG CGGCAGGGTC 
ACCCTGGTTC AGGAGTTCGG CACCGAGGTG CAGCCCGGCT TCCTGATCTA CCTGCCCGTG 
TACGCGAAGG CCATGCCGGT CGCGAGCGTG GAGCAGCGCC GCGCCGCCTT GCTGGGCTAC 
GTCTACGCGC CGTTCCGCGC GTACGACATG ATGCAGGCCA TCTTCCGCGA CGACCTGCGC 
GACGCCGACA TCGAACTGCA CGACCTGCAC GAATCGCCGC AGACCCTGCT CTACGCCTCG 
GCCGAGCGCA ATGCCGCCGC GCACTACGTC GTCACCCACG CGGTCGAGGT CGCAGGGCGC 
GAATGGGTGG TCCGCTTCAG CAGCACGCCG GCCTTCGAGG CCGACCACGC GAGCGCGGAA 
CCCGCCCTGA TCCTCTACGG TGGCAGCGCT CTCAGCCTGA TGCTGTTCGC GGTGATGCAC 
AGCAACGCCC GCCACCGCCG CCGCATGCGT GCCGCCGCGT CGCACCTGGC GCACAGCCGC 
GACGAGTTCC GCACCCTGGT CGAGAACGTG CCCGGCGTCG TCTTCCGCTG CCAGATCGAA 
CCGCCCTGGA GGGTGATGCA CATCAGCCGC GGGATCACCG CGCTCACCGG GGCGACACCC 
GAGGATTTCA TGTCCGGTCG ATTGTCGTTC GGAGACTTCA TCCTGCATGA GGACGTCCCC 
ACGATCGTCG CCGCGATCGA GAGCGCACGC ATCAGTCACA CCAACTACGA GGTGGAATAC 
CGCATGCGCG GGCGCGACCG GCGCGTCCAT TGGGTCAGCG AGCGCGGCCG CGTGGCGGTC 
GACGCCGATG ATGAACCGCT CCGGCTCGAC GGGGTGATCA TCGACATCAC CGAACGCAAG 
GCCGCCGAGG AAGCGATCCG CAATCTCGCC TTCGTCGACA CGCTGACCCA GCTCCCCAAC 
CGCCGTTTCC TGCTCGACCG CCTGCGCCAG GGCCTGGCCA ACGCGCGCCG CCACGGCCGC 
CACGGGGCGC TGCTGTTCAT CGATATCGAC CACTTCAAGC GCGTAAACGA CACCTACGGC 
CACGAGGCCG GCGACCAGCT GCTATGCGAG ATCGCGGCGC GCCTGCGCCA GGTGGTGCGC 
GAGGGCGACA CCGTGGCGCG CCTCGGTGGA GACGAGTTCG TGGTGATGCT GGAGGATCTG 
GGCGACGCCA CAGCCGAGGC GGGCGAAAAG GCAGCCCTGA TCGCCGGCAA CATCCTCGCC 
GCACTCAACG AGCCATACGC AATCGGGGCA GTGCGTCATC ACAGCACGCC CAGCATCGGC 
ATCGCCTGCT TCGACGGCGG CGAGCAGCGC GCCGAAGAAC TGCTGCGGCG GGCCGACGAG 
GCGATGTACC GCGCCAAGGC CGGCGGACGC AACCGGCTCG AGACGCTGAA CGCCTCCTAG 

 

Protein sequence

MLDRSTAAWL ALILGLLLTA VLWRYVDAHL EERTRDRFAT HATLARDNLL SRVQAYEQVL 
HGGAALFAAS DHVGRSEWAA YVAALHLERS LPGIQGTGFT VMLLPAQLEA HVAAVRAEGF 
PDYTVHPPGY RDRYSSIVYL EPFDGRNRRA FGYDMYSEPV RREAMERARD TGTAALSGRV 
TLVQEFGTEV QPGFLIYLPV YAKAMPVASV EQRRAALLGY VYAPFRAYDM MQAIFRDDLR 
DADIELHDLH ESPQTLLYAS AERNAAAHYV VTHAVEVAGR EWVVRFSSTP AFEADHASAE 
PALILYGGSA LSLMLFAVMH SNARHRRRMR AAASHLAHSR DEFRTLVENV PGVVFRCQIE 
PPWRVMHISR GITALTGATP EDFMSGRLSF GDFILHEDVP TIVAAIESAR ISHTNYEVEY 
RMRGRDRRVH WVSERGRVAV DADDEPLRLD GVIIDITERK AAEEAIRNLA FVDTLTQLPN 
RRFLLDRLRQ GLANARRHGR HGALLFIDID HFKRVNDTYG HEAGDQLLCE IAARLRQVVR 
EGDTVARLGG DEFVVMLEDL GDATAEAGEK AALIAGNILA ALNEPYAIGA VRHHSTPSIG 
IACFDGGEQR AEELLRRADE AMYRAKAGGR NRLETLNAS