Gene Tmz1t_1956 details

Gene Information

• Locus tag: Tmz1t_1956
• Symbol: mnmC
• ID: 7084424
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thauera sp. MZ1T
• Kingdom: Bacteria
• Replicon accession: NC_011662
• Strand: -
• Start bp: 2199650
• End bp: 2201584
• Gene Length: 1935 bp
• Protein Length: 644 aa
• Translation table: 11
• GC content: 76%
• IMG OID: 643698981
• Product: 5-methylaminomethyl-2-thiouridine methyltransferase
• Protein accession: YP_002355603
• Protein GI: 217970369
• COG category: [S] Function unknown
• COG ID: [COG4121] Uncharacterized conserved protein
• TIGRFAM ID: [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.243551
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCGATCC ATCCCGCCCG CCTCGAGCGC ACGCCCGAGG GCGTGCTGTA CTCGGGCGCC 
TTCGGCGACG TCTACCACTC GCGCGACAAT GCGCTCGGCC AGGCGCACGC GGTCTTCATT 
GCGGGCAACG GCCTGCCGCA GCGCTGGCAG GGGCGTGAGC GCTTCACCAT CGTCGAGACC 
GGCTTCGGCG CCGGACTGAA CTTCCTTGCC ACCTGGGCGG CGTGGCGCGA GGATGCCTGC 
CGCAGCGCCC GCCTGCACTT CGTCTCCTGC GAGCTGCACC CCTTCTGCCG CGAGGATCTC 
GCCCGCATCC ACGCCGCCTG GCCCGAGCTC GCCACCTTTG CGGCCGAGCT GCGCGCGCAG 
TGGCCGGTGC TCGCGCCCGG GCTGCACCGA CTGAACCTGG ACGCGGGCCG CGTCACCCTG 
ACGCTCTTCC TCGGCGATGC CGCCGACGGC CTCGCGCGCA TCGACGCGCG CGCCGACGCG 
CTCTATCTCG ACGGCTTCGC CCCGGCGAAG AATCCCGCGC TGTGGTCCGA GCGCGTCTTC 
CATCTGCTCG CCGGCCTCGC TGCCCCGGAC GCGACGCTCG CCACCTGGTC GGTCGCCGGC 
CAGGTGCGCG AAGGCCTGCG CCGCGCCGGC TTCACGACCG AAAAGGCGCC CGGCTTCGGC 
ACCAAGTGGC AGATGCTGCG CGGCCGCCTC GCACGCGAGG CCCGCCCGCT CGCTGTACCG 
GAGGCCGCGA CCAGCGGTCG CCACGCGCTG GTGCTCGGTG CCGGCATTGC CGGCTGCACC 
GTGGCCGAGC GCCTCGCCGG GCGCGGGTGG ACGGTGGAGC TGATCGACCG TGCCCCTGCG 
CCGGCCACGG GCGCCTCGGG CAACCTCGCC GGCGTGCTGC GCCCGCTGCC CAGCCTGGAC 
GACAACCGCA TGAGCCGGCT CACCCGCGCC GGCAGCCTGT ACGCCTGGCG GCGCATTCAT 
CAGCTGCGCG CGCGCGGCCT GGCGCTGCGC GCCGACGACT GCGGCGTGCT GCACCTGGGG 
CGCGACGCTG CACAGGAAGT CAAGATGCGC GCGGTGGTCG AACGCCTCGC GCTGCCGCCA 
GAACACTTGC GCTTCGTCGG CGTCGACGAG GCGGCGGAAA TCGCCGGCTG CGCGGTCGCC 
AACGGCGGCT GGTGGTTCGC CGGCAGCGGC TGGGTGCAGC CGCCCAGCCT GTGTGCGGCC 
AGCCTGGAGG CGGCGGGCGG GCGCCTGCGT GGGCACTTCG GCCACACCGT GGCGCGGCTC 
GGGTACGACG GCGGCGCCTG GCACGCGCAC GGGCCCGACG GCAGCACGAT CGCGAGCGCC 
CCCGTGGCGA TCCTCGCGCC CGGCACCGGC ATCGCCGACT TCGAGCAGGC CAGCCTGCCG 
GTGGTGAGCG CGCGCGGCCA GGTCTCCCAT CTGCCCGCGG TCGCGGGCAG CGCGCCGCGG 
GTGGTGGTGT GCCGCGGTGG CTACGTGAGC CCGGCGGTGG ACGGCCTGCG CTGCGCCGGC 
GCCACCTTCG CGGTGGACGA CCCCGACCCC GGCCTGCGCC CGCAGGACCA TGCCGAGAAC 
CTGCAGCGCC TGGAAGCCAT GATTCCCGGC TTCGGCGCCG GCCTGGGCGC GGGCTTCGAC 
CCCGATCGGC TCGATGGCCG GGTGGGGTTC CGGCCTGCCT CACCCGACCG CCTGCCGATG 
GTCGGGGCCC TCCCGCTGCC CGACCGGCCT CCCGCCTCGG CCGCCCGCGG CCTCGACGAG 
CTGCCGCGCC GGCCCGGGCT GTACGCGCTC TCGGGCTACG GCGCGCGCGG CCTGGTGTGG 
TCGGTGCTCG CCGCCGAGCT GCTCGCCAGC GCGCTCGAAG GCGACCCCGC CCCGCTCGAG 
CGCGACCTGG TCGAGGCGAT CGATCCGGCG CGCTTCGTGC TGCGCCCGCT TGCCAGGACG 
GCGGTGCGCG AATGA 

 

Protein sequence

MPIHPARLER TPEGVLYSGA FGDVYHSRDN ALGQAHAVFI AGNGLPQRWQ GRERFTIVET 
GFGAGLNFLA TWAAWREDAC RSARLHFVSC ELHPFCREDL ARIHAAWPEL ATFAAELRAQ 
WPVLAPGLHR LNLDAGRVTL TLFLGDAADG LARIDARADA LYLDGFAPAK NPALWSERVF 
HLLAGLAAPD ATLATWSVAG QVREGLRRAG FTTEKAPGFG TKWQMLRGRL AREARPLAVP 
EAATSGRHAL VLGAGIAGCT VAERLAGRGW TVELIDRAPA PATGASGNLA GVLRPLPSLD 
DNRMSRLTRA GSLYAWRRIH QLRARGLALR ADDCGVLHLG RDAAQEVKMR AVVERLALPP 
EHLRFVGVDE AAEIAGCAVA NGGWWFAGSG WVQPPSLCAA SLEAAGGRLR GHFGHTVARL 
GYDGGAWHAH GPDGSTIASA PVAILAPGTG IADFEQASLP VVSARGQVSH LPAVAGSAPR 
VVVCRGGYVS PAVDGLRCAG ATFAVDDPDP GLRPQDHAEN LQRLEAMIPG FGAGLGAGFD 
PDRLDGRVGF RPASPDRLPM VGALPLPDRP PASAARGLDE LPRRPGLYAL SGYGARGLVW 
SVLAAELLAS ALEGDPAPLE RDLVEAIDPA RFVLRPLART AVRE