| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_1689 |
|---|
| Symbol | |
|---|
| ID | 7084109 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | + |
|---|
| Start bp | 1895285 |
|---|
| End bp | 1896424 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 643698710 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_002355340 |
|---|
| Protein GI | 217970106 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0924391 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCGCA AACCGAACCG GCCGCTGCGC CCGCCCCTGA AGAAGAAGTC TGACGCGATC
GAGATCCTCG ACCGCGACCC GCGCGAATCC CGTGGCGCGC GCGACGACGA CGCCCAGCCC
GGCCGCAAGG ACGCGCACCT CAACGCCGAT CCGCGCGGCC CGCGCACGCC GCGTCCGCCG
CGCGCCGGTG GCGCGCCTGC GCCGCGCCGG CCGCGCATCG AGGGCGATCC CGTCCGCCAT
CCCGACGCTC ACCGTTCCGC GCTCGGCCAG CCCGAGGGCG GCGAGCGCCC CGTGCGTGGC
CGTGGGCCGG GCGGCGGGCG CAACGCGCCC ACCACGCTCA GCGAGCCCGA GCGCCTGCAG
AAGGTGCTCG CCCAGGCGGG CGTCGCCTCG CGGCGCGAGA TCGAGGAATG GGTGGTGGCC
GGGCGCATCT CGGTCAATGG CCTGCCGGCC TCGCTCGGCC AGAAGATCGG CCCGGGCGAC
CGCGTCAAGG TCAATGGCAA GCTCGTGCCG CTGCGCTTCA CCCAGCGCTC GCCGCGCGTG
CTGATCTACC ACAAGCCCGA AGGCGAGATC GTCTCGCGCG ACGACCCCGA GGGCCGTCCC
ACCGTATTCG AGCGCCTGCC CATCCTGCGC AAGGGGCGCT GGCTGGCGGT CGGGCGCCTG
GACTTCAACA CCTCGGGGCT GCTGTTGTTC ACCAACGACG GCGACCTCGC CAACAAGCTG
ATGCACCCGC GCTACGAACT CGAGCGCGAG TACGCGGTGC GCATCCTCGG CGAGCTCACC
GAAGAGCAGG TGAAGTCGCT TACCGACGGC ATCCAGCTCG AGGACGGCCC GGCCAAGTTC
AACCTGCTGC GCGACGAGGG CGGCGAGGGT GCCAACCACT GGTACCGGGT GACGATCTCG
GAGGGCCGCA ACCGCGAAGT GCGGCGCATG TTCGAAGCCG TGGGCCTGAC CGTGAGCCGG
CTGATGCGGG TGCGCTACGG CAGCGTCGAG CTGCCCGCGC GCCTCAAGCG CGGCATGTGG
ATGGAGATGC CCGAGGCCGA GGCCTGCGCG CTCGCCGGCC TGCCGCCGCC GCAGCAGAGC
CGTCAGCAGG ATCTGCGCGA CAAGCGGCCG GTGAAGCTGC ACCGCACCCA GGCGCGTTGA
|
|---|
| Protein sequence | MSRKPNRPLR PPLKKKSDAI EILDRDPRES RGARDDDAQP GRKDAHLNAD PRGPRTPRPP
RAGGAPAPRR PRIEGDPVRH PDAHRSALGQ PEGGERPVRG RGPGGGRNAP TTLSEPERLQ
KVLAQAGVAS RREIEEWVVA GRISVNGLPA SLGQKIGPGD RVKVNGKLVP LRFTQRSPRV
LIYHKPEGEI VSRDDPEGRP TVFERLPILR KGRWLAVGRL DFNTSGLLLF TNDGDLANKL
MHPRYELERE YAVRILGELT EEQVKSLTDG IQLEDGPAKF NLLRDEGGEG ANHWYRVTIS
EGRNREVRRM FEAVGLTVSR LMRVRYGSVE LPARLKRGMW MEMPEAEACA LAGLPPPQQS
RQQDLRDKRP VKLHRTQAR
|
|---|
| |