| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_1601 |
|---|
| Symbol | |
|---|
| ID | 7084810 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | + |
|---|
| Start bp | 1795055 |
|---|
| End bp | 1796020 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 643698620 |
|---|
| Product | Lytic transglycosylase catalytic |
|---|
| Protein accession | YP_002355252 |
|---|
| Protein GI | 217970018 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACAAGA CAAGTTGCCC GGTCCCGGTC GGCAGGATTG CGCGGCCACG CCTCCGGCGC
CTTCCACGGC TGCTGGGGTT GGCGGTCGCG CTGGCCTCGA CCGTTTGCGC CGCGGCCGGT
GAGGGCGCGT TCGAGCGTGC GCTCGCCGAG CAGGCCCGCT ATCTCGCCAC CGAGGCGCTG
GCCTACGAAC ACGGCGAGGG CGTGCCGCGC GACCAGTCGT ATGCGGCCTT GCTCTACTGC
GAGTCCGCGC GCCTCGGCGA CAGCGAGGGC ATGTACGCGC TTGGCTGGAT GTACGCCAAC
GGCCGTGGCG TCGAGCGCAA CGACGCCTAC GCCGGCACGC TCTTCGCGAT GGCGGCCGCG
AAAGGCGATG AACATGCGCA GCGCATGTTG CGGTACACCG GCGAATACAC CGGTGACGTA
CCGGACTGCC TGCACACGCC TTCGACCCAG ATCGTGCAGC GCTGGCCGGT CGAGGCGCTG
ATCGCGCGCC TGCCGCCGGT GCGTCAGGCG GTTGCGCGCA TGCTCGCCGA GCTGGCCCCC
AAGTACGGCG TGCGCCCCGA GTTCGCCCTC GCGATCGGGC TGACCGAGTC GGCCCTGAAC
CCCGACGCGC TCTCGCCCAA GAACGCGATG GGCGTCATGC AGCTCATCCC CGCCACGGCC
GAGCGCTTCA ATGTCGGCAA GCCCTACGAT CCCGAGCAGA ACATCCGTGG CGGCCTCGCC
TACCTGCGCT GGCTGCTGGC CTATTTCGAG GGCGACATCG CGCTCGCCGC AGCGGCCTAC
AACGCCGGAG AGGGTGCGGT GGACCGCTAT CGGGGGGTGC CGCCGTATCG CGAGACGCGT
GCCTACGTGG AGCGCATCCT GCGTCACGTC GGTCAGGATC GCCATCCCTA CGACAGCCGC
GTGGTCCCCC CCAGCCCGAT GTTGCGCAAG CTCCGCCTCG CTCTGGAAGA GGAACACGAG
TCATGA
|
|---|
| Protein sequence | MDKTSCPVPV GRIARPRLRR LPRLLGLAVA LASTVCAAAG EGAFERALAE QARYLATEAL
AYEHGEGVPR DQSYAALLYC ESARLGDSEG MYALGWMYAN GRGVERNDAY AGTLFAMAAA
KGDEHAQRML RYTGEYTGDV PDCLHTPSTQ IVQRWPVEAL IARLPPVRQA VARMLAELAP
KYGVRPEFAL AIGLTESALN PDALSPKNAM GVMQLIPATA ERFNVGKPYD PEQNIRGGLA
YLRWLLAYFE GDIALAAAAY NAGEGAVDRY RGVPPYRETR AYVERILRHV GQDRHPYDSR
VVPPSPMLRK LRLALEEEHE S
|
|---|
| |