| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_1335 |
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| Symbol | |
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| ID | 7084456 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thauera sp. MZ1T |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011662 |
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| Strand | + |
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| Start bp | 1475941 |
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| End bp | 1478703 |
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| Gene Length | 2763 bp |
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| Protein Length | 920 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 643698352 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002354990 |
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| Protein GI | 217969756 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0269119 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCGTA CCTCGCTCAA TTTCCGCCTG TGGCTGACGA TCGCGATCGC GGTACTTCCG
GTGCTGCTGT TCGTCTTTTT CGACTTCCAC GAGCGCCGTG AACAGGCGGT GGCCGAGACC
CGCGCCGAGA TCGCGCTGCG CCTGGCGGAT GCGAACCGCG AGGCGCAGGC CGCGCATCGC
GCGGTCGCGT TGGTGTTGCG GATCATGGCG CGCTCCAACG ACCTGCAAGC GCTGGATTCC
GCGCAATGCT CGGGCATCGC CGGGCGCCTG CTCAAGTCGC TGGACGGTTT CGCAAACATC
GGCGCCGCGC TGCCCGACGG GGAGATCTTC TGCAGCGGGA GGCCGATGAG CGCCCCGGTG
ACGGTGATCG ATCGCGCCTG GTTCCGCACT TCTCTCGACA GTGATGAAAT TTCCCCCGGG
GAGTTTGTCA TCGGCAGGGT GTCGGGAACG CCGAGCATGG CTTTCGGCTA CCCGCTGCGT
GCGGCGGACG GCACGCTGCG TGCGGTGATC TTCGCCACCA TCACGGTGGC GTGGTTCGAT
CGCCTGATCG AAGGGTTCCG CCTGCCTGAG GGTTGGGAGG CGAGCGTGAT CAGCAATTCC
GGCCTGGTGC TCGCGCACCA GCCCGAGCGT GCGCCCGAGG GCTGGCGCGC GCACAAGGTC
CCCGCGACGA CGCTCGCGCG CATGGCCGCC GTCGTGCGCG ACGAAGGCGG CATCGCCGAA
CTCGCCGGCA TCGATGGCGT GCAGCGCCTG TACGGCATCG GCGTGCCGGA TTTCGCCCCT
GGCAGCGGCT TTTTCGCGAT CGGTGCGCCG CTGGAGCGCT CGCTGGAGGC GGCGGGGCAG
CGCCTGCTGA TGTACCTGGC CCTGGTCGCG GCCATCGCGC TGGCCTCCGC GCTGATCGCG
CGCTTGTACA TCTACCGGCT GATCGAGGTG TGGGCGACGC GGGTGCGCGG TGCGATTGCC
GAGATCGCTG CCGGGCGGCG CGATGCGCGC ATCGGGCAGG CCACCGGCGT TGCCGAGCTC
GACGCGCTCT CCGAGGGCAT CGACCAGATG GCGTTGGAGA TCGGCAAGCG CGAGGGCGAG
CTGCAACGCC TGTCGATGGT GATCGAGCAG AGCCCGGAGT CGATCGTCAT CACCGACACC
GCGGGGTGCA TCCTGTATGT GAACGAGGCC TTCCAGCGCA TCACGGGCTA TGCGCGCGAC
GAGGTGCTCG GACGCAACCC GCGCATCCTC AACGGCGGGT TGACGCCGCG CGCAACCTAC
GAGCAGATGT GGGCGACCTT GCTTGCAGGC GAGGTGTGGC GCGGCGAGTT CCACAACGTC
CGCAAGGACG GCTCCGCCTA TCTCGAGCTG GCGACGATCG CGCCGATCAA GGACGCGGGC
GGCACGGTCA CCCACTACGT GGCGGTCAAG GAGGACATCA CGCAGCGCAA GCAATCCGAG
GCGCTGCTGC ACCGGCTGGC CTACTTCGAT GCGCTGACCG GGCTGCCCAA CCGCGCGCTG
CTGCACGACC GCATCGCCCA GGCCATCCGC AGCGGTGTGC GCCGCGAGAG CTTCGGCATG
CTGATGCTGG TCGACATCGA TCGCTTCCGC CAGCTCAACG ACACCCTCGG TCACGCCGCC
GGAGACCGCC TGCTGTGCGA GGTCGCGGCG CGCCTGCGCG CGAGCGTGCG CGAGGAGGAC
ACGGTCGCGC GCCATGGCGA CGACGACTTC GCCGTGCTCG TCGAGCGCAT CGGCGAAACC
GAGGCCGATG CGCTGAGCCA CGCCGAGCAC GTCGCACGCA AGCTCCAGCG CGCGCTGCAA
CAACCCTATG TGCTCGGTGG TACGGAGGGC GACCGCCACT TCGCGACGCT GAGCTTCGGC
ATCAGCCTGT TCCACGACGG CGTGAGCTCG CTCGAGAGCC TGCTCAAGCA GGCCGAGGTG
GCCTTGTACC GGGCCAAGCA GGACGGGCGC GACATCGTGC GCTTCTTCAA CCCCGAGATG
CAGGCGGTGG TCGATGCCCA CGCCCGTCTC GAGGCCCGCA TGCACGAGGC GCTGGAAGCG
AACGCCTTCC GGCTCTTCTT CCAGCCCCAG GTCAACCGGC GCGGCGTGGT GATCGGCGCC
GAGGCCCTGC TGCGCTGGCC GCTCGACGGT GGCGCCATGG TGTCGCCGGC CGAGTTCATC
CCGCTCGCCG AGGACACCGG CCACATCGTC CGTCTCGGCT TGTGGGTGCT GCGCAGCGCC
TGTGCCCAGC TCGCGCGCTG GCAGATGAAC GAGGGCACGC GCCACCTCAA GATCGCGGTC
AACGTCAGCG CGCGCCAGTT CCACCAGCCC GACTTCGTCG CCAGCGTGAA GGACTCCGTG
CGCGCCGCGG CCATCGACCC TTGCCGCCTC GAGCTGGAGC TCACCGAGAG CGCCATCCTG
TCGGACGTGG ACGAGACCAT CCGGCGCATG AACGAGCTGC GCGCGCTCGG CATCCGCTTC
GCGCTCGACG ACTTCGGCAC CGGCTACTCC TCGCTGTCCT ACCTCAAGCG CCTGCCCTTC
GACCAGCTCA AGATCGACCA GTCCTTCGTG CGCGACATGG CCGAGGACGA GAGCAGCGAG
GCGATCGTGC TGGCGATCCT GTCGCTGAGC CACGCGCTCG GCCTGGAGGT GGTGGCCGAG
GGGGTGGAGA TGCCGGAGCA GCGCGACTTC CTGCGCCAGC ATGGGTGCGA TTCCTTTCAG
GGTTACCTGT TCGGCAAGCC GCTGCCGATG GAGGCCTGGG GCGACTTCCT CGAGATGATC
TGA
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| Protein sequence | MIRTSLNFRL WLTIAIAVLP VLLFVFFDFH ERREQAVAET RAEIALRLAD ANREAQAAHR
AVALVLRIMA RSNDLQALDS AQCSGIAGRL LKSLDGFANI GAALPDGEIF CSGRPMSAPV
TVIDRAWFRT SLDSDEISPG EFVIGRVSGT PSMAFGYPLR AADGTLRAVI FATITVAWFD
RLIEGFRLPE GWEASVISNS GLVLAHQPER APEGWRAHKV PATTLARMAA VVRDEGGIAE
LAGIDGVQRL YGIGVPDFAP GSGFFAIGAP LERSLEAAGQ RLLMYLALVA AIALASALIA
RLYIYRLIEV WATRVRGAIA EIAAGRRDAR IGQATGVAEL DALSEGIDQM ALEIGKREGE
LQRLSMVIEQ SPESIVITDT AGCILYVNEA FQRITGYARD EVLGRNPRIL NGGLTPRATY
EQMWATLLAG EVWRGEFHNV RKDGSAYLEL ATIAPIKDAG GTVTHYVAVK EDITQRKQSE
ALLHRLAYFD ALTGLPNRAL LHDRIAQAIR SGVRRESFGM LMLVDIDRFR QLNDTLGHAA
GDRLLCEVAA RLRASVREED TVARHGDDDF AVLVERIGET EADALSHAEH VARKLQRALQ
QPYVLGGTEG DRHFATLSFG ISLFHDGVSS LESLLKQAEV ALYRAKQDGR DIVRFFNPEM
QAVVDAHARL EARMHEALEA NAFRLFFQPQ VNRRGVVIGA EALLRWPLDG GAMVSPAEFI
PLAEDTGHIV RLGLWVLRSA CAQLARWQMN EGTRHLKIAV NVSARQFHQP DFVASVKDSV
RAAAIDPCRL ELELTESAIL SDVDETIRRM NELRALGIRF ALDDFGTGYS SLSYLKRLPF
DQLKIDQSFV RDMAEDESSE AIVLAILSLS HALGLEVVAE GVEMPEQRDF LRQHGCDSFQ
GYLFGKPLPM EAWGDFLEMI
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