| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_0825 |
|---|
| Symbol | pyrF |
|---|
| ID | 7084217 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | + |
|---|
| Start bp | 913504 |
|---|
| End bp | 914328 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 643697849 |
|---|
| Product | orotidine 5'-phosphate decarboxylase |
|---|
| Protein accession | YP_002354490 |
|---|
| Protein GI | 217969256 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0284] Orotidine-5'-phosphate decarboxylase |
|---|
| TIGRFAM ID | [TIGR02127] orotidine 5'-phosphate decarboxylase, subfamily 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACTTCA TGACCGCCCT CCGCGCCGCC TGGCAGCAGC GCGACAGCCT GCTCTGTGTC
GGCCTCGACC CCGACCCCGC CAGGTTCCCC GCCCACCTGC AGGGGCGCTC CGACGCCATC
CTCCGGTTCT GCACGCAGAT CGTCGACGCC ACCGCCGACC TGGTGTGCTG CTTCAAGCCG
CAGATCGCCT ACTTCGCCGC GCACCGCGCC GAGGATCAGC TCGAGGCGCT GGTCGAGCAC
ATCCACGCCC GCCATCCCGG CACCCCGGTC GTCCTCGACG CCAAGCGCGG CGACATCGGC
AGCACCGCCG AGCAGTACGC CATCGAGGCC TTCGAGCGCT TCAAGGCCGA CGCCATCACG
GTCAATCCCT ACATGGGCCG CGACTCGGTC GATCCCTACC TGGCCTACCC CGACAAGGGC
GTGATCCTGC TCTGCCGCAC CTCCAACCCG GGCGGTTCGG ACCTGCAGTT TCTGGAGGTC
GATACGTCGA AGGGCCGCAT GAAGCTGTAT GAACACGTCG CGCGCACCGT CGCCGAGGAC
TGGAACGCCA GCGGCAACTG CGCGCTCGTC GTCGGCGCCA CCTTCCCGGC CGAGATCGCA
CGCGTGCGTG CGCTCGTCGG CGAGCTGCCG CTGCTGGTGC CGGGCATCGG CGCCCAGGGC
GGCGACATCG CCGCGACCCT GGCGGCGGGG CGCACGGAGA ACGGCACCGG GCTGATGATC
AATTCCTCGC GCGCGGTGCT GTATGCGGGG AAGGGGGAAG ACTTCGCGGA AGCGGCGCGG
AGGGTGGCGG AGGAGACGCG GGACGCGATC AATGCGTACC GCTGA
|
|---|
| Protein sequence | MHFMTALRAA WQQRDSLLCV GLDPDPARFP AHLQGRSDAI LRFCTQIVDA TADLVCCFKP
QIAYFAAHRA EDQLEALVEH IHARHPGTPV VLDAKRGDIG STAEQYAIEA FERFKADAIT
VNPYMGRDSV DPYLAYPDKG VILLCRTSNP GGSDLQFLEV DTSKGRMKLY EHVARTVAED
WNASGNCALV VGATFPAEIA RVRALVGELP LLVPGIGAQG GDIAATLAAG RTENGTGLMI
NSSRAVLYAG KGEDFAEAAR RVAEETRDAI NAYR
|
|---|
| |