| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_0548 |
|---|
| Symbol | |
|---|
| ID | 7085162 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | + |
|---|
| Start bp | 616972 |
|---|
| End bp | 619209 |
|---|
| Gene Length | 2238 bp |
|---|
| Protein Length | 745 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 643697575 |
|---|
| Product | UvrD/REP helicase |
|---|
| Protein accession | YP_002354217 |
|---|
| Protein GI | 217968983 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.254513 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCCCC CTATCGAGAC CCTTCCCGGG CCGAACTCCG AGCCTCGCTC CAAGACCTCC
TCCCCGCGGC CGCCGGCCGC CGATCCGCTC GCGGCGCTCG ACCCCGCCCA GCGCGCCGCG
GTCGGGCACG GCATCGGCGC CGATGGCCGC ATCGACGCCG GGCCGCTGCT GGTGATCGCC
GGCGCCGGCT CGGGCAAGAC CGGCACGCTC GCGCACCGCG TGGCGCGCCT CGCGGCGGCC
GGGGCCGATC CCGCGCGCAT CCTGCTGCTG ACCTTCTCGC GCCGCGCCGC GGACGAGATG
GGCCGGCGCG TGCGTCGCAT CCTCGCGCAG GCCGCCGCCG ACCGTCCCGG CCTGGCGCGC
GCCGAGCTGC AGTGGGCGGG CACCTTCCAC GCCATCGGCG CGCGCCTGCT GCGCGACCAC
GCCGGCCGCA TCGGGCTCGA CCCCGGCTTC AGCATCCACG ACCGCGAGGA CTCCGCCGAC
CTGATGAACC TGGTGCGCCA CGAGCTCGGG CTGTCGGCGA CGAAGCAGCG CTTCCCGCAG
AAGGGCACCT GCCTGGCGAT CTATTCGGCG GTGGTCAACA CGCGCGCCGC GCTCGCCGAG
GTGCTGCAGG CGAGCTTCCC GTGGTGCGCG CAGTGGGAGG ACGAGCTCAA GCGCCTGTTC
CGCGCCTACG TCGAGGCCAA GCAGGCGCAG CAGGTGCTCG ACTACGACGA CCTGCTGCTG
TACTGGGCGC AGATGGTGGG CGAGGCGGAG CTCGGTGCCG AAATCGGCGG CCTCTTCGAC
CACGTGCTGG TCGACGAATA CCAGGACACC AACGCGCTGC AGGCGGCGAT CCTGCTCGCG
ATGAAACCGG ACGGCCGCGG CCTGACCGTG GTCGGCGACG ACGCGCAGTC GATCTACGCC
TTCCGCGGCG CCACGGTGCG CAACATCCTC GACTTCCCGG CGGCCTTCGA GCCGCCGGCG
CGGGTGGTGA CGCTGGAGCG CAACTACCGC TCCACCCAGC CCATCCTCGA CGCCGCCAAC
GCGGTGATCG CGCTCGCCGC CGAGCGCTTC GCCAAGAACC TGTGGAGCGA GCGCGCCTCG
GCGCAGCGCC CGCGCCTGGT GACGGTGAAG GACGAGGCGG CGCAGGCCGA CTTCGTGGTC
GACAGCGTGC TGGCGCGCCG CGAGGAAGGG CTGAAGCTCA AGCAGCAGGC GGTGCTGTTC
CGCGCCTCGG CGCACAGCGC GCGCCTGGAA CTGGAGCTGA CCCGGCGCAA CATCCCCTTC
GTGAAGTACG GCGGGCTCAG GTTCCTCGAG GCCGCCCACG TCAAGGACGT GCTCGCGCTC
CTGCGCTGGG CGGAGAACCC GCGCGACCGC ATCGCCGGCT TCCGTGCCAT CCAGCTGCTC
GCCGGCATCG GCCCCAGGAC TGCCGGGCGC GTGCTCGACA ACGTCTGCAG CGCGCCGCCG
GGCTGCGTGC TGCTCGCCGA GCAGCCGGTG CCGGAGGCGG CGCGCCCGGG GTGGCTGGAG
TTCGCCACGC TGGTCGACCG GCTTTCCGGG CGGGAGGAGG CCTCGACCGC CGCATTCGCG
CCTGGCGGCG CTCCTGCACG AACCACCGCG CCTGTCCGTG CGGAGGGTCT TGCGGGCGGG
GCGAGGGGCG GCCTGCCGTG GCCGACCGAC TTCGAGCTCG CCTGCCGTTG GTACGAGGCG
CAGATGCCGC GCCTGTACGA CGATTTCCAG GTGCGCGTGC TCGACATCCA GCAGCTCGCG
CGCATCGCCG CCACCAGCCC GAGCCGGCAG CGCTTTCTCA CCGAACTCAC GCTCGATCCG
CCCAGCGCCA CCAGCGCCGA GGCCGGCATG CCGCTGCTCG ACGAGGACTA CCTGATCCTG
TCGACCATCC ACTCGGCCAA GGGCCAGGAG TGGAACGCGG TGAGCGTGCT CAACGTGGTC
GACGGCTGCA TCCCTTCGGA CGTCGCCACG CGCGACAGCG CCGAGATCGA GGAAGAGCGC
CGCCTGCTCT ATGTGGCGAT GACGCGCGCG AAGGACGCCC TCGACCTGAT CGTGCCGCAG
CGCTTCCACG TCACCCAGCA GACGGGCCTG GGCGATCGCC ATGTCTATGC CGGGCGCAGC
CGCTTCATCC CCAACCGTCT GCTCGGGCAC TTCGAGCAGA TGAGCTGGCC GTTGCCTGCG
CCCGAACTCC AGGGCTCGCC GGCCTCGCGC CAGGCGGCGA TCGACCTCGC CGCGAAGATG
CGCGACATGT GGCGATGA
|
|---|
| Protein sequence | MSPPIETLPG PNSEPRSKTS SPRPPAADPL AALDPAQRAA VGHGIGADGR IDAGPLLVIA
GAGSGKTGTL AHRVARLAAA GADPARILLL TFSRRAADEM GRRVRRILAQ AAADRPGLAR
AELQWAGTFH AIGARLLRDH AGRIGLDPGF SIHDREDSAD LMNLVRHELG LSATKQRFPQ
KGTCLAIYSA VVNTRAALAE VLQASFPWCA QWEDELKRLF RAYVEAKQAQ QVLDYDDLLL
YWAQMVGEAE LGAEIGGLFD HVLVDEYQDT NALQAAILLA MKPDGRGLTV VGDDAQSIYA
FRGATVRNIL DFPAAFEPPA RVVTLERNYR STQPILDAAN AVIALAAERF AKNLWSERAS
AQRPRLVTVK DEAAQADFVV DSVLARREEG LKLKQQAVLF RASAHSARLE LELTRRNIPF
VKYGGLRFLE AAHVKDVLAL LRWAENPRDR IAGFRAIQLL AGIGPRTAGR VLDNVCSAPP
GCVLLAEQPV PEAARPGWLE FATLVDRLSG REEASTAAFA PGGAPARTTA PVRAEGLAGG
ARGGLPWPTD FELACRWYEA QMPRLYDDFQ VRVLDIQQLA RIAATSPSRQ RFLTELTLDP
PSATSAEAGM PLLDEDYLIL STIHSAKGQE WNAVSVLNVV DGCIPSDVAT RDSAEIEEER
RLLYVAMTRA KDALDLIVPQ RFHVTQQTGL GDRHVYAGRS RFIPNRLLGH FEQMSWPLPA
PELQGSPASR QAAIDLAAKM RDMWR
|
|---|
| |