| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | UUR10_0136 |
|---|
| Symbol | ligA |
|---|
| ID | 6983835 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ureaplasma urealyticum serovar 10 str. ATCC 33699 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011374 |
|---|
| Strand | + |
|---|
| Start bp | 163579 |
|---|
| End bp | 165600 |
|---|
| Gene Length | 2022 bp |
|---|
| Protein Length | 673 aa |
|---|
| Translation table | 4 |
|---|
| GC content | 26% |
|---|
| IMG OID | 643399711 |
|---|
| Product | DNA ligase, NAD-dependent |
|---|
| Protein accession | YP_002284543 |
|---|
| Protein GI | 209554205 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
|---|
| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.145225 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAGAA TAAAAGCTAA AATTAATGAA TTAAAACAAA AACTTGATCA ATGAAATTAT
GAATATTATG TTTTAGATGA TCCAAGTGTG CCAGATCATG TTTATGATCA AGCAATGCGT
GAGTTGATTG AATTAGAAAA TGCTTATCCC CAATTTAAAA CCAACAATTC ACCAAGTGTT
CGTGTTGGTG GTTTTGTTTC TGAAAAATTT AATAAAGTAA AGCATAAAAG ACCAATGTTA
TCGCTTTCAA ATGCTTTTGA TGCTAATGAT TTAAGAAAAT TTGATCAAGA TAATCAAAAT
GCTAGTGTTG ATCTAAAGGG ATATGTAGTT GAGCCTAAAA TTGATGGTTT AAGTATTTCG
ATTATTTATA AAAATGCTAA ATTACACCAA GCAATCACAA GAGGTGATGG TGTTAATGGC
GAAGACGTCA CTTCTAATAT TTTAACGATT AAAGATATTC CACACTATAT TGATCAAAAA
TATAAAGACT ATGAAATTGA AGTTCGTGGT GAAGTTTATA TGGCATTTCA TGATTTTTAT
GAAATGAATG ATAATTTAGA AGAAAGTGAT AAAAAATTTG CTAATCCAAG AAATGCTGCC
GCTGGAACAC TAAGAAGTTT AGATAATTCA ATTGTTGCAG AACGTAAACT AAGTGCTTTT
ATGTACTATT TAGTCAATGC ACAAGAATTA GGAATAAAAA CGCATTATGA AAGTATTCAA
TTTTTAAAAG ATAATAAATT TAAAGTTAGT GATTTAATTG TTAAAGTTGA TACAATTGAT
GAAGTTATTA ACCAAATTGA TCGTTATACT AAAGTGCGTA ATGATCTTTC ATATATGATA
GATGGTATTG TTATTAAAAT TAATAATTTA GAAGTTTATG ATGAAATTGG TTATACTTCT
AAATTTCCTA AATGAGCAAT TGCTTATAAA TTTCCAGCTA ATGTTGTTAG TTCACAATTA
TTAGAAATTA TTAATGATGT TGGACGTACA GGAAAAATTT CATATGTTGC TAAAATTAAA
CCAATCTTAT TAGATGGTAG TATAGTTGAA TATGCTACTT TACATAATTT TGATTTCATT
AAAGAAAAAG ATATTCGAAT TAATGATGAA ATTAAAATTT ATAAAGCTGG GGATGTAATT
CCTTATGTTG ATGGTGTTGA TTTATCAAAA CGTTTAGCAA ATAGTGTTCC TTATGAATCA
ATTACAAATT GTCCTTCATG CCAATCAGTT TTAGTGCGTG AAAATGATGA AGTTGATCAA
CGTTGTTTAA ACATTTATGG ATGTAAAAAA ATAAACATTG AAAAAATTGT TTATTTTGTT
TCTCGTAATT GTATGAATAT TGAAGGAATG AGTGATGCGA TCATTAATAA ATTTTATGAT
GCAAATTTAA TTAAAAATGT TGCAGATTTA TACTATTTAC AAAAACACAA AGAATTTATT
TTAGCTAGTG ATTTTAAAAT TAAAGACAAA AGTTTTAGTA ATTTAATTAA TAGTATTAAT
AATTCAAAAA CACGTTCTTT AGAATTTTTA TTAACAGCTT TTGGTATTCG TCATGTTGGT
CCAAATTTAG CTAAAAAATT AGCTAAACAA TTTAAAACAA TGACCACTTT AATGCATGCT
AATTTTGGTG AATTAACTAA TGTTGATGCA TGTGGTGAAA AAGCTGCTTT GTCATTAATT
AATTGGTTTA ATGATGATCA TAATGTTTCT TTAGTTAATC AATTACAACA AGTTGGTGTA
AATATGGAAT ATATTGATGA TTTTATTTAT GATGATAACA TCAATATAAT TGATGAATAT
AAAAATAAAA CTTTTGTTAT TACTGGTTCA TTTAGTATTA GTCGTGATGA AATTAAAACT
ATTTTAGAGA AATATTATCA TGCAAAAGTT AAAAACAGTG TTTCTAAAAA AACAGATTAT
GTTTTAGCTG GCATTGAAGC GGGTACGAAA TTAGAAAAAG CTAAATTATT AGGTGTCAAA
ATTATTGAAA ATGAATTTTG AAAAAAGGAT AATAATTTTT AA
|
|---|
| Protein sequence | MDRIKAKINE LKQKLDQWNY EYYVLDDPSV PDHVYDQAMR ELIELENAYP QFKTNNSPSV
RVGGFVSEKF NKVKHKRPML SLSNAFDAND LRKFDQDNQN ASVDLKGYVV EPKIDGLSIS
IIYKNAKLHQ AITRGDGVNG EDVTSNILTI KDIPHYIDQK YKDYEIEVRG EVYMAFHDFY
EMNDNLEESD KKFANPRNAA AGTLRSLDNS IVAERKLSAF MYYLVNAQEL GIKTHYESIQ
FLKDNKFKVS DLIVKVDTID EVINQIDRYT KVRNDLSYMI DGIVIKINNL EVYDEIGYTS
KFPKWAIAYK FPANVVSSQL LEIINDVGRT GKISYVAKIK PILLDGSIVE YATLHNFDFI
KEKDIRINDE IKIYKAGDVI PYVDGVDLSK RLANSVPYES ITNCPSCQSV LVRENDEVDQ
RCLNIYGCKK INIEKIVYFV SRNCMNIEGM SDAIINKFYD ANLIKNVADL YYLQKHKEFI
LASDFKIKDK SFSNLINSIN NSKTRSLEFL LTAFGIRHVG PNLAKKLAKQ FKTMTTLMHA
NFGELTNVDA CGEKAALSLI NWFNDDHNVS LVNQLQQVGV NMEYIDDFIY DDNINIIDEY
KNKTFVITGS FSISRDEIKT ILEKYYHAKV KNSVSKKTDY VLAGIEAGTK LEKAKLLGVK
IIENEFWKKD NNF
|
|---|
| |