| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg2_3630 |
|---|
| Symbol | rocD |
|---|
| ID | 6982392 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhizobium leguminosarum bv. trifolii WSM2304 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011369 |
|---|
| Strand | + |
|---|
| Start bp | 3758598 |
|---|
| End bp | 3759797 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643398354 |
|---|
| Product | ornithine--oxo-acid transaminase |
|---|
| Protein accession | YP_002283121 |
|---|
| Protein GI | 209551204 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4992] Ornithine/acetylornithine aminotransferase |
|---|
| TIGRFAM ID | [TIGR01885] ornithine aminotransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.159022 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACTT CGGAAAAACT GATCGCCACC GAACAGCGTC TCGGCGCCCA CAATTACAAG
CCGCTCGACG TGGTGCTGAC CCGCGGCGAA GGTGTTCATG TCTGGGATAC CGACGGCAAT
CGTTACCTCG ATTGCCTCTC GGCCTATTCC GCCGTCAACC AGGGCCATTG TCACCCGAAA
ATCCTCGCCG CCATGGTCGA GCAGGCGGGA AGATTGACGC TGACCTCCCG CGCCTTCCGC
AACGATCAGC TCGCTTATCT CTATGAAGAG CTCGCGGCGT TGACCGGATC GCACAAGATC
CTGCCGATGA ACTCAGGCGC CGAAGCGGTG GAGACCGCCA TCAAGGCGGT GCGCAAATGG
GGATACGAGG TCAAAGGTGT ACCGGAAGGC CAGGCCGAGA TCATCGTCTG CGCCGATAAT
TTCCATGGCC GGACGCTGAG CATCATCAGT TTCTCCACCG ATCCCGACGC CCGCACCGGC
TTCGGCCCCT ACACCTCGGG CTTCCGCACC ATTCCCTTCG GCGATGCCGA AGCCTTCGAG
GCCGCCATCA ACGGCAATAC GGTCGCCGCC CTGATCGAGC CGATCCAGGG GGAAGCCGGC
GTCATCATCC CGCCGGCCGG ATACTTCACC CGCATCCGCG AGCTCTGCAC CGATAACAAC
GTCACTCTCA TCCTCGACGA GATCCAGACC GGCCTCGGCC GCACCGGCAA GCTCTTGGCG
GAGGAACATG AAGGCATCGA GGCCGATGTG ACGCTGATCG GCAAGGCGCT GTCCGGCGGC
TTCTATCCCG TCTCGGCGGT GCTTTCCAAT TCCGCGGTAC TGGGGGTGCT GAAGCCCGGC
CAGCATGGCT CCACTTTCGG CGGCAATCCG CTCGCCTGCG CAGTGGCGCG CGCCGCGCTG
AAGGTGCTGA CGGAAGAGGG CATGATCGAG AACGCCGCTG ATATGGGCGA CTATTTCCTC
GAAGGCCTCA GGTCGATCCG CTCGAACATC GTCAGGGACG TGCGCGGCCG CGGCCTGATG
ATGGCTGTCG AACTGGAACC CGAGGCCGGC GGCGCGCGGC AATATTGTCA TGCGCTGAAG
GAACGCGGCC TGCTCGCCAA GGATACGCAT GACCATACGA TTCGCCTCGC TCCGCCGCTG
GTCATCACCA GGGAGCAGGT CGATTGGGCG GTCTCGCAGA TCGAAAAGAC CATAAGCTGA
|
|---|
| Protein sequence | MNTSEKLIAT EQRLGAHNYK PLDVVLTRGE GVHVWDTDGN RYLDCLSAYS AVNQGHCHPK
ILAAMVEQAG RLTLTSRAFR NDQLAYLYEE LAALTGSHKI LPMNSGAEAV ETAIKAVRKW
GYEVKGVPEG QAEIIVCADN FHGRTLSIIS FSTDPDARTG FGPYTSGFRT IPFGDAEAFE
AAINGNTVAA LIEPIQGEAG VIIPPAGYFT RIRELCTDNN VTLILDEIQT GLGRTGKLLA
EEHEGIEADV TLIGKALSGG FYPVSAVLSN SAVLGVLKPG QHGSTFGGNP LACAVARAAL
KVLTEEGMIE NAADMGDYFL EGLRSIRSNI VRDVRGRGLM MAVELEPEAG GARQYCHALK
ERGLLAKDTH DHTIRLAPPL VITREQVDWA VSQIEKTIS
|
|---|
| |