| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg2_1302 |
|---|
| Symbol | |
|---|
| ID | 6980026 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhizobium leguminosarum bv. trifolii WSM2304 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011369 |
|---|
| Strand | - |
|---|
| Start bp | 1325766 |
|---|
| End bp | 1328663 |
|---|
| Gene Length | 2898 bp |
|---|
| Protein Length | 965 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 643396019 |
|---|
| Product | ribonuclease, Rne/Rng family |
|---|
| Protein accession | YP_002280822 |
|---|
| Protein GI | 209548905 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1530] Ribonucleases G and E |
|---|
| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000158665 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0123334 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGACA AAATGCTTAT CGATGCGTCT CACGAGGAAG AGACGCGCGT CGTTGTCGTT
CGCGGGAACC GCATAGAAGA ATTTGACTTC GAGTCCCAGC ACAAGAAGCA GATCCGCGGC
AACATCTATC TGGCAAAGGT AACGAGGGTC GAGCCCTCGC TGCAGGCCGC CTTCGTCGAT
TACGGCGGCA ACCGGCACGG CTTCCTGGCC TTTGCCGAAA TCCATCCCGA CTATTATCAG
ATACCGCTTG CCGACCGTCA GGCGCTGCTT CGGGCCGAAG CCGAGGAGCA TCGCCGCGAC
GAAGACGTCG AGCATGTCGA AACCGCGCCA ATGGTCGATC TTTCCAAGCA GGATCAGCCG
GATGTCGGCA TCGTGCCGGC AGAGGCGCCG GAAACGGCTG ATGTAACGGC AGAGCCGGCA
GCGGCGGAGG CAGTTGCATC GCCCGAGGCC ACCGAGGAAG CGCCGGCCAA GAAGGCCAGA
CCGCGCCGCA GCCGCAAGAA GGCCGCCGAG CCGGCGCCTG AGACGACCGC GACCGAGGAC
GCCGTTCCCA CAGACGTCGA AGCCGAAGGC GCTTCGAGCG TCGACAACGA GGATGACGGC
TCGACCGGCG GCGCAATGGC CGCCATGGTC GAAACCGACT CGATCTCCGA AGACATCGAT
ACCAGCAAGC GTCGCCACGA TGACGACGAC GACGATGACG ATCATGGCGA AGAGGAAGTC
ATCGAATCCG TCGGCGCCGA AGACGCGATG GAAGAGGTGC CGGACCGCGT GCAGCGCAAG
CCGCGCAAGC AGTACCGCAT CCAGGAAGTC ATCAAGCGTC GCCAGATCCT GCTGGTGCAG
GTCGCCAAGG AAGAGCGCGG CAACAAGGGC GCGGCGCTGA CCACCTATCT CTCGCTTGCC
GGCCGCTATT CCGTGCTGAT GCCGAACACG GCGCGCGGCG GCGGTATTTC CCGCAAGATC
ACCAACCCTG CCGACCGCAA GCGCCTGAAG GAAATCGCGC GTATGCTCGA AGTGCCGCAG
GGCATGGGCG TCATCCTGCG CACCGCCGGC GCCAACCGCA CCAAGGTCGA GGTCAAGCGC
GACTTCGAAT ATCTGATGCG CCTCTGGGAG AACGTGCGCA CGCTGACGCT GGCGTCCACC
GCTCCCTGCC TCGTCTATGA GGAAGGCTCG CTGATCAAGC GTTCGATCCG CGACCTCTAC
AACAAGGATA TCGGCGAGAT CATCGTTGCC GGCGAGGAAG GCTATCGTGA AGCGAAAGAC
TTCATGAAGA TGCTGATGCC GAGCCATGCC AAGGTGGTTC AGCCCTATCG AGACATCCAC
CCGATCTTTT CGCGCTCCGG CATCGAAGCC CAGCTCGACC GCATGCTGCA GCCGCAGGTA
ACGCTGCGTT CCGGCGGCTA CCTGATCATG AACCAGACGG AAGCGCTGGT CTCGATCGAC
GTCAACTCCG GCCGCTCGAC GCGCGAACAC TCGATCGAGG ACACCGCGCT GCAGACCAAC
CTCGAAGCCG CTGAGGAAAT CGCCCGCCAG CTTCGCCTGC GCGACCTTGC CGGCCTGATC
GTCATCGACT TCATCGACAT GGAAGAGAAG CGCAACAACC GCGCTGTCGA AAAGAAGCTG
AAGGAATGCC TGAAGAACGA CCGCGCCCGC ATCCAGGTCG GCCGCATCTC GCATTTCGGC
CTGCTGGAAA TGTCGCGCCA GCGCATCCGT GCCTCGGTTC TCGAATCGAC GACGCAGGTC
TGCTCGCATT GCGGCGGCAG CGGCCATGTG CGTTCGCAGT CCTCCGTGGC GCTGCATGTC
CTGCGCGGTA TCGAGGAATA TCTGCTCAAG AATACCACGC ACAACATCAG CGTACGCACC
ACGCCTGACA TTGCGCTCTA CCTGCTCAAC CACAAGCGCC AGACGATCAT CGATTACGAA
AACCGTTTCG GCGTCGCTAT CGTCATCGAT GCGGACGGTT CGGTCGGCGC GCAGCATTTC
GCCATCGATC GCGGCGAGGC CGTGGAAAAC CCGGTCAAGA TCGAGACGCT CTTCAACTTC
GCAGCCATTC CTGAGGATGA CGACGACGAC ATCGTCATCG AAATTGATGA GGACGAAGAC
GAGGAACTCG AGGAAAAGCC GGCAGCCACC GAGCGACCCG TCGCGGCACG CTCGGAAGGC
GAAGGTGACG GTAACCGCAA GCGCAAGCGC CGCCGGCGCC GGCGCGGCCG CAACGGCAAT
GCCGAGCAGC CGGCATCGGC AGCAGGCGAA GCCGGCGACG AGGATGAAGA CGGCGACGAC
GAGAGCGGCG AAGGTGATGA AACCACCGAA GGCGCGACGG AGACGCTGGC TGAAAGCGAA
GAATCGCAGC GCCGCAAGCG CCGCCGTCGC GGCAAGCGTG GCGGCCGCCG CAACCGCGCC
GAAGATGGTT CCGAACTGAC GGTCGGCGAA GCCGGTGAAG ACAATGGCGG TGACGACGGC
GGCGAAGAAG GCGAAGCCGA CGACGTTTCG AACGACGGCG CTCCTGGAGA AGCCGAAACG
GTCGAGGCGG TTGCCGAGCA GGCTGGCGAA AGCCAGGCCG CAGCCGCCGC TGTCGAGGGT
GCGGCTATTG TCGCCGAGGA TGTGAAGCCC GCCCGGGGCC GTGGCCGCCG CAAAGCCGCC
GCAGCGCCTG TGGAGGAGCC AGTGGCAGAA GCAGCTCCTG TCGCCGAAGC CGAGCCGGAG
TTGGTCGAGG CCTCCGCCGA TCTCGAAACG CCTGCTCAGG AAGAGGCCCC GGAAGAGGCA
AAGCCAGTTC GCGCCAACCG CGAATCCAAC ATCACCTCCT CCGAGCCGAC GGTGAAATCC
ACCCGCAGCG AAAATGGCGA AAGCGACGAC GGCAAGCCGA AAAAGGCCGG TTGGTGGCAG
CGCCGTGGCT TCTTCTGA
|
|---|
| Protein sequence | MADKMLIDAS HEEETRVVVV RGNRIEEFDF ESQHKKQIRG NIYLAKVTRV EPSLQAAFVD
YGGNRHGFLA FAEIHPDYYQ IPLADRQALL RAEAEEHRRD EDVEHVETAP MVDLSKQDQP
DVGIVPAEAP ETADVTAEPA AAEAVASPEA TEEAPAKKAR PRRSRKKAAE PAPETTATED
AVPTDVEAEG ASSVDNEDDG STGGAMAAMV ETDSISEDID TSKRRHDDDD DDDDHGEEEV
IESVGAEDAM EEVPDRVQRK PRKQYRIQEV IKRRQILLVQ VAKEERGNKG AALTTYLSLA
GRYSVLMPNT ARGGGISRKI TNPADRKRLK EIARMLEVPQ GMGVILRTAG ANRTKVEVKR
DFEYLMRLWE NVRTLTLAST APCLVYEEGS LIKRSIRDLY NKDIGEIIVA GEEGYREAKD
FMKMLMPSHA KVVQPYRDIH PIFSRSGIEA QLDRMLQPQV TLRSGGYLIM NQTEALVSID
VNSGRSTREH SIEDTALQTN LEAAEEIARQ LRLRDLAGLI VIDFIDMEEK RNNRAVEKKL
KECLKNDRAR IQVGRISHFG LLEMSRQRIR ASVLESTTQV CSHCGGSGHV RSQSSVALHV
LRGIEEYLLK NTTHNISVRT TPDIALYLLN HKRQTIIDYE NRFGVAIVID ADGSVGAQHF
AIDRGEAVEN PVKIETLFNF AAIPEDDDDD IVIEIDEDED EELEEKPAAT ERPVAARSEG
EGDGNRKRKR RRRRRGRNGN AEQPASAAGE AGDEDEDGDD ESGEGDETTE GATETLAESE
ESQRRKRRRR GKRGGRRNRA EDGSELTVGE AGEDNGGDDG GEEGEADDVS NDGAPGEAET
VEAVAEQAGE SQAAAAAVEG AAIVAEDVKP ARGRGRRKAA AAPVEEPVAE AAPVAEAEPE
LVEASADLET PAQEEAPEEA KPVRANRESN ITSSEPTVKS TRSENGESDD GKPKKAGWWQ
RRGFF
|
|---|
| |