Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rleg2_0477 |
Symbol | |
ID | 6979193 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhizobium leguminosarum bv. trifolii WSM2304 |
Kingdom | Bacteria |
Replicon accession | NC_011369 |
Strand | + |
Start bp | 488816 |
End bp | 490885 |
Gene Length | 2070 bp |
Protein Length | 689 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 643395190 |
Product | RNA-binding S4 domain protein |
Protein accession | YP_002280001 |
Protein GI | 209548084 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.53583 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.544761 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACACCCA AAGACAAGCC AAAACGCCCG GGCGCAAAGC CCTTTTCACG CGACAGCGGG CCGAAGGCCG GCGCGAAGTC GGGCGGCACG AAGCCGGCAA AGGCTGCGAT CGCGGCCGAG ACCGAAGGCG AGGCCAAGGC CGAACGCATT TCCAAGGTGA TGGCACGCGC CGGCGTCGCC TCCCGCCGCG ACATCGAGCG CATGATCATG GAAGGCCGCG TGACGCTGAA CGGCGCGGTT CTCGACACCC CGGTCGTCAA CGTCACGCTC GCCGATCGCA TCGAGGTCGA CGGCGTGCCG ATCCGCGGCA TCGAGCGCAC CAGGTTGTGG CTCTATCATA AGCCGGCCGG GCTGGTGACC ACCAATGCCG ATCCCGAAGG CCGCGCGACC GTCTTCGACA ACCTGCCGGA AGAACTGCCG CGCGTCATGT CGATCGGCCG CCTCGATATC AACACCGAGG GCCTGCTGCT GCTGACCAAT GACGGCGGTC TTGCCCGCGC GCTCGAACTG CCGGCCACCG GCTGGCTGCG CCGCTACCGT GTCCGCGCCC ATGGCGACAT CGATCAGGAC GCGCTCGACA AGCTGAAGGA CGGCATCGCC GTCGACGGCG TGCTCTACGG TTCGATCGAG GCGACGCTCG ACCGCACGCA GGGCTCGAAC GTCTGGATCA CCATGGGTCT TCGCGAAGGC AAGAACCGCG AAATCAAGAA CGTGATGGGC GCTCTCGGCC TCGACGTCAA CCGTCTGATC CGCATCTCCT ATGGCCCGTT CCAGCTCGGC GACTTGCCGG AAGGCCATGT CATCGAAGTG CGCGGCCGCA CGCTTCGCGA CCAGCTCGGC CCGCGCCTGA TCGAGGAAGC CAAGGCGAAT TTCGATGCGC CGATCTACAA TGCGCCGGCC GTCGCCGCCG AGGAAGAGGC TGAAGCCCCA GTGCCGGAAC GGCGCGAGCA ACGTCCGCGC CGCGACGAGG ACAAGCGCGA ACGGGCGCTG AGCCGCCTCG ACACCAAGCG CGACGATCGC CGCGGTGGCG GGCGTAGAGA TGACGACCGC CGCGATGGCG GACGCTTCGA CGACGACAAG CCGAAACGTC CCCAGCCGCT CGGCCAGCGC CGCAGCGCCA ATGTCTGGAT GGCGCCGGGT GCCCGGCCGC TCGGTGAAAA GGCAGCGGCG AAAGCCGCCA AGAATGAGCA GACCGCGCGG CGCGGCGAGC ACGCGCCGGC AAAGGGCACT GGTTCCCACC ATATCGAGGA TCGCCCGCGC ACGCAGATCA ATCGCGTGCG CGAAGAGGAC GGCGAATGGA TCCGCTCGAG CGAGCAGCCC AACCGTAAGG ATGAGGGCGA AGGCCGCAAG CGATCGTTCG GGGATCGGCC GGCCCGCGAA GACCGCGGTT TTGGCGACCG CCCGGCCCGC GGCGACCGCC GCCCCCGTGA AGGGGGTGAC GAACGTCCGC GTAGCAGAAG CTCGGCCGGC GAAGGCCGGC CGGAGCGTCC GCGCGGCGAT CGGCCTTTCG GTGATCGTCC CTCGCGTGGT GATCGTCCCT CGCGTGGTGA TCGTCCCTTC GGCGACAAGC CGCGCGGTGA TCGCAAACCG CGTGGCGATG GGGACGAACG TCCTCGTGCC GCCAGAGCCT CCACCGGTGA GGCGCGTTCG GAGCGTCCGC GCGGTGACCG GCCTTTCGGC GATCGTCCTT CACGTGGCGA CCGCCCCTTC GGCGACAAGC CGCGGGGTGA ACGCAGGCCG CGCGAGGAGG GTGATGAGCG CCCGCGCGCA GCCAGAAGTT TTGCCGGCGA GGGCCGCTCC GAGCGTCCGC GTGGCGAAAA ATCCTTCGGC GACAAGTCCC CAGGCGGCAG GCCTTCGAGC GGGAAGCCTT CGGGCGATAA GCCGCGCGGC AAGGGCTTTG GCGCCAAGCC GGGCGGGGCC AAGAGTTTTT CCGGTAAGCC GAAGGGCGCC AAGCCTGGTG GTGAAAGGGC AGGCGGCGAC AGGCCAGGCG GCGACAGGCC TGCGGGCGGG CCGTCCAGAA GTGGTGGAAA AGGAAAGGGA ATGACACGCG GTGCGGATCG TCGGCGGTGA
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Protein sequence | MTPKDKPKRP GAKPFSRDSG PKAGAKSGGT KPAKAAIAAE TEGEAKAERI SKVMARAGVA SRRDIERMIM EGRVTLNGAV LDTPVVNVTL ADRIEVDGVP IRGIERTRLW LYHKPAGLVT TNADPEGRAT VFDNLPEELP RVMSIGRLDI NTEGLLLLTN DGGLARALEL PATGWLRRYR VRAHGDIDQD ALDKLKDGIA VDGVLYGSIE ATLDRTQGSN VWITMGLREG KNREIKNVMG ALGLDVNRLI RISYGPFQLG DLPEGHVIEV RGRTLRDQLG PRLIEEAKAN FDAPIYNAPA VAAEEEAEAP VPERREQRPR RDEDKRERAL SRLDTKRDDR RGGGRRDDDR RDGGRFDDDK PKRPQPLGQR RSANVWMAPG ARPLGEKAAA KAAKNEQTAR RGEHAPAKGT GSHHIEDRPR TQINRVREED GEWIRSSEQP NRKDEGEGRK RSFGDRPARE DRGFGDRPAR GDRRPREGGD ERPRSRSSAG EGRPERPRGD RPFGDRPSRG DRPSRGDRPF GDKPRGDRKP RGDGDERPRA ARASTGEARS ERPRGDRPFG DRPSRGDRPF GDKPRGERRP REEGDERPRA ARSFAGEGRS ERPRGEKSFG DKSPGGRPSS GKPSGDKPRG KGFGAKPGGA KSFSGKPKGA KPGGERAGGD RPGGDRPAGG PSRSGGKGKG MTRGADRRR
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