Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rleg2_4876 |
Symbol | |
ID | 6977970 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhizobium leguminosarum bv. trifolii WSM2304 |
Kingdom | Bacteria |
Replicon accession | NC_011368 |
Strand | + |
Start bp | 516021 |
End bp | 518213 |
Gene Length | 2193 bp |
Protein Length | 730 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643394034 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_002278852 |
Protein GI | 209546934 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.735464 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCCATGG TGAGGAGATC CGTCGTGACA TTGTCCCAAT CGCTTCTGCA GCCGGCCCCT ATCTTCGACA TTGCCGAGCA CAAGCAGGCA GAGCGGGAGC TCAAGAAGGC GCTTGAATTC GCAGAGGGGA TCATCGCCGC CATTCCGGAT GTTCTCTTCG AGGTGGATGA GGACGGCCGT TACCTTCAGG TCTGGACAAG AAACCCCGAA CTGCTGGCCC AGCAGAAGGA GATGCTGCTC GGCAGGACGG TCAACGACGT TCTTGCGCCC GATCAGGCGG CTATCGCGAT GGAGGCTCTA CGCGACGCCG GCAAAGAGGG AGTTGCCTAC GGACGATGCA TTCGCATCTC CCTGCCAAAC GGTGAGACGC GATGGTTCGA GCTGTCGATA GCCAAGCGGC CGAGTGCCGA TCCGGCGGCA GCCACCACGC TCTTGGCATT CTCGCGAGAT ATCACCGAGC GAAAACAAGC CGAGGACGCC ATCAACTCCG TGCGGACGCA GTTGCTGAGC GTGCTCCAGA CCATGCCCGA CATGATCTGG GTCAAGGACA TGAATGGCGT CTATCTGCTG TGCAACCACA CCTTCGAGCG GCTGACCGGG ATGGCTGAGG CCGAGGTTGT CGGAAAGACG GATTTGGAGC TGTTCGACAT AGAGAGGGCT CGGTTCTTTC AACAATCGGA CAAAGCGGCG ATCAAGGCCG GCGAATGCAT CCTCAGCGAT GAGGAATGGG TCGTTTCGCA GGAGAACGGT CAAACCATTC TTCTGGAAAC CCGCAAGGTG CCGGTCATTG ATGCGGCGGG AGAGGTCGTC GGGGTTCTCG GCGTGGCGCG AGATGTGACC GAGTTGAACG TCTCGCGCCA GAAAATTCAT CAGATGGCCT TTTATGATCC CTTGACCTCG CTGCCTAATC GATCGCTGTT CAACGACCGG TTGCGGCAGA TGATCACCTC GGCCGGATCG CGAGGCCAAC GGGCTGGGCT GATGCTGATC GACATCGACC ATTTCAAGGT GGTCAACGAT ACGATGGGCC ATCCCGTCGG CGATGATTTG CTTTGTCAGG CAGCGGCCCG CCTCAATGCC AGCGTTCGCG ATCATGACAC CGTCGCCCGT CTCGGCGGCG ACGAATTCGC GATCCTGTTG CCGGATATCA GCCAAGGCGA CGATCTCGGC CGGATTGCCA ATAATATCCT CGATAAGTTC AGGGAGCGCT TCCTGCTGGA TGGTCAGGAG GTCTTCGTTT CATGCAGCGT CGGCATCGCG CTCTATCCCG ATGACAGCGC CGATGCCAAC GACCTGGTGA AATACGCCGA CTCGGCGATG TATCTCGCCA AACGCTCGGG ACGAAACAGT TTTCGTTTCT ATTCAAAGGA TCTGACGGCA AGTGCCGAAG AGCGCATGCG GTTGGAATCG GATTTGCGCC GCGCGATCGA GCGCGGCGAA CTGGAACTGC ACTATCAGCC CAAGGTGCTT CTGGACAGCG GCGCCATGGT CGGCTGCGAA GCCTTGCTGA GATGGCGCCA CCCCGAAATG GGTATGATTC CGCCCGTCCG CTTCATTCCG GTCGCCGAAG ATACGGGGCT GATCGTGGAA CTTGGGCGAT GGGTGCTGCA CGAGGCGTGC CAGACCGCGG CCGAACTGAA TGCCGATAGC CGCTCACCGC ATAAGGTGGC GATCAATCTG TCGGTCAAAC AATTCCAATC CGCCGGATTG GTGAAGTCGA TCGCCCAGAT TATCGATGAG ACCGGTTGCC GCGCCGAATG GGTCGAAATC GAAATAACCG AAAGCCTCCT GCTCGATCAG AAGGATGAAA CGCTGCAGGC GCTGTCCGAG CTCCGAAGCA TGGGATTTTC GATCGCCATC GATGATTTCG GCACCGGCTA TTCGGCGCTC AACTATCTGG CGCGCTTCCC GATCGATACG CTGAAGATCG ACCGGTCGTT CATCAACAGC ACCGACAGAC GCAACGAGGA ACTGGTGAAG GCGATCCTTT CCATCGCGCG CTGTCTTGGA CAGAGCGTGG TGGCGGAAGG CGTCGAAACC GCCGAACAGG CAGCTTTCCT CGTGGCAAAC GGATGCGGGA CGGCGCAGGG ATTCCTCTAC AGCAAAGCCG TGCCCAAGGC TGATATCATC GCCCTGTGGC TGCGTTCTCC AGAGAGCGGC GCCAACCTGG AAGAGATGCG GTTTTGCGGA TGA
|
Protein sequence | MPMVRRSVVT LSQSLLQPAP IFDIAEHKQA ERELKKALEF AEGIIAAIPD VLFEVDEDGR YLQVWTRNPE LLAQQKEMLL GRTVNDVLAP DQAAIAMEAL RDAGKEGVAY GRCIRISLPN GETRWFELSI AKRPSADPAA ATTLLAFSRD ITERKQAEDA INSVRTQLLS VLQTMPDMIW VKDMNGVYLL CNHTFERLTG MAEAEVVGKT DLELFDIERA RFFQQSDKAA IKAGECILSD EEWVVSQENG QTILLETRKV PVIDAAGEVV GVLGVARDVT ELNVSRQKIH QMAFYDPLTS LPNRSLFNDR LRQMITSAGS RGQRAGLMLI DIDHFKVVND TMGHPVGDDL LCQAAARLNA SVRDHDTVAR LGGDEFAILL PDISQGDDLG RIANNILDKF RERFLLDGQE VFVSCSVGIA LYPDDSADAN DLVKYADSAM YLAKRSGRNS FRFYSKDLTA SAEERMRLES DLRRAIERGE LELHYQPKVL LDSGAMVGCE ALLRWRHPEM GMIPPVRFIP VAEDTGLIVE LGRWVLHEAC QTAAELNADS RSPHKVAINL SVKQFQSAGL VKSIAQIIDE TGCRAEWVEI EITESLLLDQ KDETLQALSE LRSMGFSIAI DDFGTGYSAL NYLARFPIDT LKIDRSFINS TDRRNEELVK AILSIARCLG QSVVAEGVET AEQAAFLVAN GCGTAQGFLY SKAVPKADII ALWLRSPESG ANLEEMRFCG
|
| |