| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gdia_3172 |
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| Symbol | murD |
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| ID | 6976610 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gluconacetobacter diazotrophicus PAl 5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011365 |
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| Strand | - |
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| Start bp | 3474283 |
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| End bp | 3475680 |
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| Gene Length | 1398 bp |
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| Protein Length | 465 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 643392684 |
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| Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
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| Protein accession | YP_002277517 |
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| Protein GI | 209545288 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
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| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00926215 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGGCC CGGGCCTGTT CCCCCCCGGC CTGTTGGCCG GCAGCCGCTA CGCGGTGCTG
GGGCTGGGGC GCAACGGCGC CCCCGCCGTC CGCGCGCTGG CCGCGATGGG GGCGGACGTG
CAGGCCTGGG ATGACGGCGA CGCCGCTCGT GCGGCGGTCG CGGACGTGCC GGGCGTCGCC
ATCGCGCCGT TCGACACGCT GGCGGGGTTC GACGCGCTGG TGCTCTCGCC CGGCATTCCG
CACATCCTGC CCCACCCGCA TCCTGTCGCC CGGATGGCGC ACGCGGCGGG CGTTCCCATC
CTGTCGGATG CCAACCTGCT GTTCCAGGCG GTGCGCCGGT CCGGGTCGCG CGCGCGCTTC
GCCGGCATCA CCGGAACCAA CGGCAAATCG ACCACCACCA CCCTGCTGGC CCACATGCTC
CACACCGCCG GCCTGCCGGT CGCGGCGGGC GGGAACCTGG GCCCGGCGGC GCTGGCGCTG
CCGCTGCTGC CCGACACGGG CGTCTATGTG CTGGAAATGT CGTCCTACAT GCTGGAACGG
CTGCGGGACC TGCGCTTCGA CGCCGCGTGC CTGCTGAACC TGACGCCCGA CCACCTGGAC
CGCCATGGCG ACATGGCAGG CTATCGACGG GCCAAGCAGC ACGTCTTCGA CCGCCAGGGA
CCGGGCGACC TGGCCGTGCT GGGCCAGTAC GACGCCCCGG ACGACGCGGC GCTGGCCCGC
GACCTGGCGG CGCGCGGCAT CCGGGTCGTC ACCATATCCG GCACCCGTGC CGACGCCGGC
CTGACCGGCG CCGGGGGTGT GCTGCGCGAC GCGGACGGGC CGATCGCCAC CCTGGCCGAT
GCCCCATCCC TGCCCGGCGC GCACAATGCC GAAAACGCGG CGGCGGCGGC GGCGATGGCC
CTGGCGCTGG GCGTGCCGCG CGCCACGATC GCCGGCGCGC TGCGGACCTT CCCGGGCCTG
GCCCACCGGC AGAAGCCGGT CGGCACCGTC GACGGCGTGC GCTTCATCGA CGACAGCAAG
GCGACGAACG CCGATGCCGC ATCGCGGGCG CTGGGCTGCT ACGACCGGCT GGTGTGGATC
GCGGGCGGTG TGGCCAAGGC CGGCGGAATC GCGGACCTGG CGCCGTTCTT CCCGCGCGTG
GCCCATGCTT TCCTGATCGG GCAGGACGCG CCGGCGCTGG CCGAAACCCT GGCCGCGCAC
GGCGTTGCCT TCACGCTGTC GGGCACGATG GACGCGGCGG TGCCCGCCGC CCTCGCCCTG
GCGCGGCGGG ACGGCGTGCC GGTGGTGCTG CTGTCCCCCG CCTGCGCCAG CTTTGATCAG
TACGCCAGCT TCGAACATCG CGGCCGGCAC TTCGCGGACC TGGTCCGCCT GCTGGCGCCC
ACATTGGGGA CGGACTGA
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| Protein sequence | MSGPGLFPPG LLAGSRYAVL GLGRNGAPAV RALAAMGADV QAWDDGDAAR AAVADVPGVA
IAPFDTLAGF DALVLSPGIP HILPHPHPVA RMAHAAGVPI LSDANLLFQA VRRSGSRARF
AGITGTNGKS TTTTLLAHML HTAGLPVAAG GNLGPAALAL PLLPDTGVYV LEMSSYMLER
LRDLRFDAAC LLNLTPDHLD RHGDMAGYRR AKQHVFDRQG PGDLAVLGQY DAPDDAALAR
DLAARGIRVV TISGTRADAG LTGAGGVLRD ADGPIATLAD APSLPGAHNA ENAAAAAAMA
LALGVPRATI AGALRTFPGL AHRQKPVGTV DGVRFIDDSK ATNADAASRA LGCYDRLVWI
AGGVAKAGGI ADLAPFFPRV AHAFLIGQDA PALAETLAAH GVAFTLSGTM DAAVPAALAL
ARRDGVPVVL LSPACASFDQ YASFEHRGRH FADLVRLLAP TLGTD
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