| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gdia_2960 |
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| Symbol | rpoB |
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| ID | 6976394 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gluconacetobacter diazotrophicus PAl 5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011365 |
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| Strand | + |
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| Start bp | 3240983 |
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| End bp | 3245155 |
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| Gene Length | 4173 bp |
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| Protein Length | 1390 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 643392468 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_002277305 |
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| Protein GI | 209545076 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.514981 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 0.612032 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCGA TGACCAAATC GTTCACGGGA CGCAAGCGCA TCCGCAAGAG CTTCGGGCGG
ATACCCGAAA TCGCTCCGAT GCCCAATCTG ATCGACGTGC AGCGCGCCAG CTACGAGGCG
TTCCTGCAGA TGAACGTGTC ACCCGACAGC CGGACGCAGA CCGGCCTGCA GGAGGTGTTC
CGTTCGGTCT TCCCGATCAA TGATTTCGCC GGCCGGGGCC GTCTCGAATT CGTCAATTAC
GAACTCGAGG AACCGAAATA CGACGTCGAG GAATGCATCC AGCGCGGCCT GACCTTCGCG
GCGCCGCTGA AGGTCGTACT GCGCCTGATC GTCTGGGACG TGGACGAGGA TACCGGCTCG
CGCTCGATCC GCGACATCAA GGAACAGCCC GTCTATATGG GCGACATGCC GCTGATGACC
GACAACGGCA CGTTCATCAT CAACGGGACC GAGCGCGTCA TCGTCAGCCA GATGCACCGT
AGCCCCGGCG TCTTCTTCGA TCACGACAAG GGCAAGACCC ATTCCTCGGG CAAGTTCCTG
TTCGCCGCGC GCGTCATCCC CTATCGCGGG TCGTGGCTGG ACTTCGAATT CGACAGCAAG
GACCTGATCT ACGTCCGCAT CGACCGCAAG CGGAAGCTGC CGGTCACCAC GCTGCTCTAC
GCGCTGGAGG GTGCTTCCTC CGCCGCCGCC CGCGCCGCCA AGGTGGCCGA GGGCGGGGAC
GTCGACGCGC TGGAAATCCG CGGCATGGAT GCCGACGAAA TCCTGGGCTA TTTCTACAAT
CAGGTCGTCT TCACGAAGGG CCCGAAGGGC TGGGCGCGTC CGTTCGACGC CGAGTCGTTC
CGTGGCCTGA AGCTGCTGGA ACCGCTGGTG GACGCCCAGA GCGGCGAGGT GGTGGCCGAG
GCCGACGCCA AGCTGACGGC CCGCATGGTG CGCAAGATCG CCGAGACGAC CAAGGAAGTC
CTGGTCGGTC CCGCCGGCCT GATCGGCCGC TACGTCGCCC ATGACCTGGT CAACATGGAA
ACCGGCGAGA TCTATGCCGA AGCCGGCGAG GAACTGACCG AGGTCCGTCT GGAGGCGCTG
GAAGAAGCGG GTGTGGACCA GTTGCCGACG CTGGCCGTCG ATGCGTCGAA CGGTCCGTGG
ATCCGCAACA CGCTGACGGT GGACAAGAAC ACGTCGCGCG AGGACGCGCT GACCGACATC
TATCGCGTCA TGCGCCCTGG CGAGCCGCCG ACCCCCGAGA CCGCCGAAGC CATGTTCTCC
GGCCTGTTCT TCGATGCGGA CCGCTATGAC CTGTCGGCGG TCGGCCGGGT GAAGATGAAC
ATGCGCCTGG GCCTGGACGC CCCGGACACG ATCCGCGTGC TGCGCAAGGA AGACATCCTG
CGCACCGTCA AGATCATGTG CGAGCTGAAG GACGGCCGCG GCGCGATCGA CGACATCGAC
AACCTGGGCA ACCGTCGCGT CCGCTCGGTC GGCGAGCTGA TGGAAAACCA GTATCGCGTC
GGCCTGCTGC GCATGGAACG CGCGATCCGC GAGCGCATGG GCTCGGTCGA TATCGACACC
GTGATGCCGC ACGACCTGAT CAACGCCAAG CCGGCGGCGG CGGCGGTGCG CGAATTCTTC
GGTTCGTCGC AGCTCAGCCA GTTCATGGAC CAGACCAACC CGCTGTCCGA AGTCACGCAC
AAGCGTCGCC TCTCGGCCCT CGGGCCGGGC GGCCTGACGC GCGAGCGCGC GGGCTTCGAG
GTGCGTGACG TCCATCCGAC CCATTACGGC CGCATCTGCC CGATCGAAAC GCCGGAAGGC
CCGAATATCG GCCTGATCAA CTCGCTGGCG ACCTACGCCA AGGTGAACAA GTACGGCTTC
ATCGAAACGC CGTACCGCCT GGTGCGCGAG GGCGTGCTGC AGGACGGCTG GAAATACCTC
TCCGCCATGG AAGAGGAAAA GCTGATCGTC GCCCAGGCGG ACGCGAAGCA GGACAGCCAC
GGCAAGCTGA CGGACGAACT GGTCTCGGTC CGCCGTGGCG GCGACTTCCG CCTGGTGAAG
CCCGAGGAAG TGACGGCCTG CGACGTCTCG CCCAAGCAGC TCGTCTCGGT CGCCGCGGCG
CTGATCCCGT TCCTGGAAAA CGACGACGCC AACCGCGCGC TGATGGGCTC GAACATGCAG
CGCCAGGCGG TGCCGCTGGT CCGCTCTGAC GCGCCGCTGG TCGGCACGGG CATGGAAGCG
GCGGTCGCCC ATGATTCGGG TGCGACCATC GTGGCCAAGC GCGGCGGCAT CATCGACCAG
ATCGACGGCG CGCGCATCGT GGTTCGCGCG ACGGACGAGG CCGGGGCGAC CCAGGGCGTC
GATATCTACC GCCTGCGCAA ATACATGCGG TCGAACCAGT CTACCTGCAT CAACCAGCGT
CCGCTGGTCC GCGTGGGCGA CCGGGTGCGC GGCGGCGACA TCATTGCCGA CGGTCCGTCG
ACCGAACTGG GCGAACTGGC GCTGGGCCGG AACGTGCTGG TCGCGTTCAT GCCGTGGAAC
GGGTACAATT TCGAAGATTC GATCCTGATT TCCGAGCGGA TCGCCCGCGA TGACGTCTTT
ACCTCGATCC ATATCGAGGA ATTCGAGGTC ATGGCCCGTG ACACCAAGCT GGGCCAGGAA
GAAATCACCC GCGACATCCC CAATGTCGGC GAGGAAGCGC TGCGCAACCT CGACGAGGCG
GGCATCGTCT ATGTCGGCGC CGAGGTGAAC CCGGGCGACA TCCTGGTCGG CAAGGTCACG
CCGAAGGGCG AAAGCCCGAT GACGCCGGAA GAGAAGCTGC TGCGCGCCAT CTTCGGCGAA
AAGGCGTCCG ACGTCCGCGA CACGTCGCTG AAGCTGCCCC CGGGCACGAC CGGCACCATC
GTCGATGTGC GCGTCTTCTC GCGTCGCGGC GTGGACAAGG ACGAGCGCGC GATGGCGATC
GAGCGCGCCG AGATCGAACG TCTGGCCAAG GACCGCGACG ACGAGCGCGC GATCCAGGAA
CGCTCGTTCT ACAACCGGCT GCGCGAGCGT CTGGTGGGCC AGGTCTCCGG CACCGGCTTC
AAGGGCCTGC GTTCGGGCAC CGAGATCACC GAGGAGGTGC TGGCCGAGCA TCCGCGCGGC
GCGTGGCGGA ACATCACCGT CGCCTCCGAT CCGGTGATGG TGGAACTGGA AGTGCTGCGC
CGCGAATTCG ACGCGGCGGT GGCGCGCATC CAGGCCCGCT TCGAAAGCAA GGTCGAGAAG
CTGCAGCGCG GTGACGAGCT GCCGCCGGGC GTGATGAAGA TGGTCAAGGT CTTCGTCGCG
GTGAAGCGCA AGCTGCAGCC GGGCGACAAG ATGGCCGGCC GTCACGGCAA CAAGGGTGTC
GTCTCGCGCG TCGTCCCGGT CGAGGACATG CCGTTCCTCG AGGACGGCAC GCCGGTCGAC
CTGGTGCTGA ACCCGCTGGG CGTGCCGTCG CGCATGAATG TCGGGCAGAT CCTGGAAACC
CATCTGGGCT GGGCCTGCGC CAATATCGGC CGCGGCATCG GCGAACTGGT CGACGACTAC
CAGCGCACCG GCGAGAAGAA GCAGGAGCTG CTGGGCCGCC TGAAGACGGT CTATGGCGAC
CAGGTCTATG ACGACGCCAT CGTCGACCTG CCGAACGACC AGCTGGTCGA ACTGGCCAAC
AACCTGCGCA AGGGCGTGCC GATCGCGACC CCGGTGTTCG ACGGCGCGTC GATCCCGGAT
ATCGAGGCGA TGCTGGAAAG CGCCGGCGTC AACAAGTCGG GCCAGTCGCA GCTGATCGAC
GGCCGCACCG GCGAGCCGTT CGAGCGTCGG ACCACGGTCG GCTACATCTA CATGCTGAAG
CTGCATCACC TGGTCGACGA CAAGATCCAT GCCCGTTCGA TCGGTCCGTA CTCGCTGGTG
ACGCAGCAGC CCCTGGGCGG CAAGGCCCAG TTCGGCGGCC AGCGCTTCGG CGAGATGGAG
GTCTGGGCGC TGGAGGCGTA CGGCGCGGCC TATACATTGC AGGAAATGCT GACGGTGAAG
TCGGACGACG TGTCCGGCCG CACCAAGGTC TACGAAGCGA TCGTGCGCGA GCAGGACGAT
TTCGAGGCCG GCATTCCCGA GAGCTTCAAC GTCCTGATCA AGGAACTGAA ATCGCTCGGC
CTGAACGTGG ATCTGGAGCA GAGCAATGAC TGA
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| Protein sequence | MNAMTKSFTG RKRIRKSFGR IPEIAPMPNL IDVQRASYEA FLQMNVSPDS RTQTGLQEVF
RSVFPINDFA GRGRLEFVNY ELEEPKYDVE ECIQRGLTFA APLKVVLRLI VWDVDEDTGS
RSIRDIKEQP VYMGDMPLMT DNGTFIINGT ERVIVSQMHR SPGVFFDHDK GKTHSSGKFL
FAARVIPYRG SWLDFEFDSK DLIYVRIDRK RKLPVTTLLY ALEGASSAAA RAAKVAEGGD
VDALEIRGMD ADEILGYFYN QVVFTKGPKG WARPFDAESF RGLKLLEPLV DAQSGEVVAE
ADAKLTARMV RKIAETTKEV LVGPAGLIGR YVAHDLVNME TGEIYAEAGE ELTEVRLEAL
EEAGVDQLPT LAVDASNGPW IRNTLTVDKN TSREDALTDI YRVMRPGEPP TPETAEAMFS
GLFFDADRYD LSAVGRVKMN MRLGLDAPDT IRVLRKEDIL RTVKIMCELK DGRGAIDDID
NLGNRRVRSV GELMENQYRV GLLRMERAIR ERMGSVDIDT VMPHDLINAK PAAAAVREFF
GSSQLSQFMD QTNPLSEVTH KRRLSALGPG GLTRERAGFE VRDVHPTHYG RICPIETPEG
PNIGLINSLA TYAKVNKYGF IETPYRLVRE GVLQDGWKYL SAMEEEKLIV AQADAKQDSH
GKLTDELVSV RRGGDFRLVK PEEVTACDVS PKQLVSVAAA LIPFLENDDA NRALMGSNMQ
RQAVPLVRSD APLVGTGMEA AVAHDSGATI VAKRGGIIDQ IDGARIVVRA TDEAGATQGV
DIYRLRKYMR SNQSTCINQR PLVRVGDRVR GGDIIADGPS TELGELALGR NVLVAFMPWN
GYNFEDSILI SERIARDDVF TSIHIEEFEV MARDTKLGQE EITRDIPNVG EEALRNLDEA
GIVYVGAEVN PGDILVGKVT PKGESPMTPE EKLLRAIFGE KASDVRDTSL KLPPGTTGTI
VDVRVFSRRG VDKDERAMAI ERAEIERLAK DRDDERAIQE RSFYNRLRER LVGQVSGTGF
KGLRSGTEIT EEVLAEHPRG AWRNITVASD PVMVELEVLR REFDAAVARI QARFESKVEK
LQRGDELPPG VMKMVKVFVA VKRKLQPGDK MAGRHGNKGV VSRVVPVEDM PFLEDGTPVD
LVLNPLGVPS RMNVGQILET HLGWACANIG RGIGELVDDY QRTGEKKQEL LGRLKTVYGD
QVYDDAIVDL PNDQLVELAN NLRKGVPIAT PVFDGASIPD IEAMLESAGV NKSGQSQLID
GRTGEPFERR TTVGYIYMLK LHHLVDDKIH ARSIGPYSLV TQQPLGGKAQ FGGQRFGEME
VWALEAYGAA YTLQEMLTVK SDDVSGRTKV YEAIVREQDD FEAGIPESFN VLIKELKSLG
LNVDLEQSND
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