| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gdia_0087 |
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| Symbol | |
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| ID | 6973476 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gluconacetobacter diazotrophicus PAl 5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011365 |
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| Strand | - |
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| Start bp | 99769 |
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| End bp | 101772 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 643389618 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_002274502 |
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| Protein GI | 209542273 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0603338 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 0.251774 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGAAC AGAACACAGG CGCACAGCCG GGGGGCTCGG TTCCGACGCG TGGCCGCTTT
CCGCTGCTGG ACCGGGTGGC GTATCCCGAG GACCTGCGGA ACCTGTCGGT GGAGCAGCTG
AAGCAGCTGG CCGAGGAATT GCGGGCCGAG ACGGTGGACG CGGTATCCAC CACCGGCGGG
CACCTGGGCG CGTCGCTGGG CGTGGTGGAG CTGACGGTGG CGCTGCACGC GGTGTTCGAC
ACCCCGGCCG ACCGGGTGAT CTGGGATGTC GGCCACCAGG CCTATCCGCA CAAGATCCTG
ACCGGACGGC GCGAGCGCAT CCGCACCCTG CGCCAGCCCG GCGGCCTGTC GGGCTTCACC
CGCCGGTGCG AGAGCGAATA CGACCCGTTC GGCGCCGCCC ATTCCTCGAC CTCGATCTCC
GCCGGGCTGG GCATGGCGGT GGCGCACCAC CTGCGCGCCG AGCACGACCC CGCCTATCGC
GAGCGCAACG TCGTCGCCGT CATCGGTGAC GGCTCGATTT CCGCCGGCAT GGCCTACGAG
GCGATGAACA ACGCCTCGGT CGCCGGCCCC GGCGCCGGGC GGCTGATCGT GGTGCTGAAC
GACAACGAGA TGTCGATCGC GCCCCCGGTC GGCGCCATGT CCAACTACCT GTCGCGGCTG
ATGTCCTCGC GCCAGTTCCT CGGCCTGCGC GACCTGGCCG GCAAGGTGGC CCGCCGCCTG
CCCGAGCGGC TGGAGCGCAC CGCCAAGAAG GCCGATGAAT ATGCCCGCGG CATGATCACC
GGCGGCACGC TGTTCGAGGA GCTGGGCTTC TACTACGTCG GCCCGGTCGA CGGCCACGAC
CTGAACCAGC TGGTGCCGAT CCTGCGCAAC CTGCGCGACG CCGACGACAA GGGCCCGATC
CTGCTGCACA TCCTCACCGA GAAGGGACGC GGCTACCGCC CGGCCGAATC GGCGGGTGAC
AAGTACCACG CGGTGGCCAA GTTCAACGTG GTGACCGGCG AGCAGAAGAA GGCCCCGCCG
GGACCGCCCA GCTATACCTC GGTGTTCAGC CGCGAGCTGG TGCGCCGGGC GAAGCAGGAC
GACACCATCG TCGCCGTCAC CGCCGCCATG CCCTCGGGCA CCGGGCTGGA CGCCTTCGCC
CGCGCCTGCC CCGACCGCTT CTTCGATGTC GGCATCGCCG AACAGCATGC GGTGACGTTC
GCCGCCGGCA TGGCGACCGA GGGGCTGCGG CCGTTCTGCG CCATCTATTC CACCTTCCTG
CAGCGCGCCT ACGACCAGGT GATGCATGAC GTGGTGCTGC AGAACCTGCC GGTGCGCTTC
GCCATCGACC GCGCCGGGCT GGTCGGCGCC GACGGCGCCA CCCATGCCGG GGCGTTCGAC
ATCAACTATC TGGGCTGCCT GCCGGGCATG ACCATCATGG CCCCCAGCGA CGAGCTGGAA
CTGCTGCACA TGACGGCGAC CGCCTGCGCC TTCGATGCCG GGCCGATCGC CCTGCGCTAC
CCGCGCGGCA ACGGGCTGGG CCTGGCGCTG CCCGAGGCCG GCGAGATCCT GGAGATCGGC
CGCGGCCGCA TCATCCGCGA GATGGGCCGC CAGTCGGGGC GCGAGACCGG CGGTATCGCC
ATCCTGTCGC TGGGCACCCG CCTGGCCGAG GTGCTGAAGG CCGCCGACAT GCTGGCCGCC
CAGGGGCTGG CCCCCACCGT CGCCGACGCC CGCTTCGCCA AGCCGCTGGA TACCGCGCTG
ATCGAGAACC TGGCCCGCAA CCACGCCGTG CTGCTGACCA TCGAGGACGG CGCCGAGGGC
GGTTTCGGCG CCTATGTCAT GCACCACCTG GCCCGCACCG GGCTGCTGGA CACCATCCGC
TTCCGGCCCA TGACCCTGCC GGACCGCTTC ATCGACCACA ACACCCAGGA CGCCCAATAC
CACCAGGCCG GCCTGGACGC CCCAGCCATC GCCGCATGCG CCATGCAGGC CCTGGGGGTT
GCCGCGTCCC AACAGACGGC CTGA
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| Protein sequence | MSEQNTGAQP GGSVPTRGRF PLLDRVAYPE DLRNLSVEQL KQLAEELRAE TVDAVSTTGG
HLGASLGVVE LTVALHAVFD TPADRVIWDV GHQAYPHKIL TGRRERIRTL RQPGGLSGFT
RRCESEYDPF GAAHSSTSIS AGLGMAVAHH LRAEHDPAYR ERNVVAVIGD GSISAGMAYE
AMNNASVAGP GAGRLIVVLN DNEMSIAPPV GAMSNYLSRL MSSRQFLGLR DLAGKVARRL
PERLERTAKK ADEYARGMIT GGTLFEELGF YYVGPVDGHD LNQLVPILRN LRDADDKGPI
LLHILTEKGR GYRPAESAGD KYHAVAKFNV VTGEQKKAPP GPPSYTSVFS RELVRRAKQD
DTIVAVTAAM PSGTGLDAFA RACPDRFFDV GIAEQHAVTF AAGMATEGLR PFCAIYSTFL
QRAYDQVMHD VVLQNLPVRF AIDRAGLVGA DGATHAGAFD INYLGCLPGM TIMAPSDELE
LLHMTATACA FDAGPIALRY PRGNGLGLAL PEAGEILEIG RGRIIREMGR QSGRETGGIA
ILSLGTRLAE VLKAADMLAA QGLAPTVADA RFAKPLDTAL IENLARNHAV LLTIEDGAEG
GFGAYVMHHL ARTGLLDTIR FRPMTLPDRF IDHNTQDAQY HQAGLDAPAI AACAMQALGV
AASQQTA
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