| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_5688 |
|---|
| Symbol | hfq |
|---|
| ID | 6971801 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | + |
|---|
| Start bp | 5329213 |
|---|
| End bp | 5329521 |
|---|
| Gene Length | 309 bp |
|---|
| Protein Length | 102 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 643389321 |
|---|
| Product | RNA-binding protein Hfq |
|---|
| Protein accession | YP_002273714 |
|---|
| Protein GI | 209400687 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1923] Uncharacterized host factor I protein |
|---|
| TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0502195 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAGG GGCAATCTTT ACAAGATCCG TTCCTGAACG CACTGCGTCG GGAACGTGTT
CCAGTTTCTA TTTATTTGGT GAATGGTATT AAGCTGCAAG GGCAAATCGA GTCTTTTGAT
CAGTTCGTGA TCCTGTTGAA AAACACGGTC AGCCAGATGG TTTACAAGCA CGCGATTTCT
ACTGTTGTCC CGTCTCGCCC GGTTTCTCAT CACAGTAACA ACGCCGGTGG CGGTACCAGC
AGTAACTACC ATCATGGTAG CAGCGCGCAG AATACTTCCG CGCAACAGGA CAGCGAAGAA
ACCGAATAA
|
|---|
| Protein sequence | MAKGQSLQDP FLNALRRERV PVSIYLVNGI KLQGQIESFD QFVILLKNTV SQMVYKHAIS
TVVPSRPVSH HSNNAGGGTS SNYHHGSSAQ NTSAQQDSEE TE
|
|---|
| |