| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_5566 |
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| Symbol | soxR |
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| ID | 6969961 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli O157:H7 str. EC4115 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011353 |
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| Strand | + |
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| Start bp | 5205816 |
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| End bp | 5206280 |
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| Gene Length | 465 bp |
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| Protein Length | 154 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 643389206 |
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| Product | redox-sensitive transcriptional activator SoxR |
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| Protein accession | YP_002273603 |
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| Protein GI | 209397033 |
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| COG category | [K] Transcription |
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| COG ID | [COG0789] Predicted transcriptional regulators |
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| TIGRFAM ID | [TIGR01950] redox-sensitive transcriptional activator SoxR |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.953635 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 67 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAAAAGA AATTACCCCG CATTAAAGCG CTGCTAACCC CCGGCGAAGT GGCGAAACGC
AGCGGTGTGG CGGTATCGGC GCTGCATTTC TATGAAAGCA AAGGGTTGAT TACCAGTATC
CGTAACAGCG GCAATCAGCG GCGTTATAAA CGTGATGTGT TGCGATATGT CGCAATTATC
AAAATTGCTC AGCGTATTGG CATTCCTCTC GCGACCATTG GTGAAGCGTT TGGCGTGTTG
CCCGAAGGGC ATACGTTAAG TGCGAAAGAG TGGAAACAGC TTTCGTCCCA ATGGCGAGAA
GAGTTGGATC GGCGCATTCA TACCTTAGTG GCGCTGCGTG ACGAACTGGA CGGATGTATT
GGTTGTGGCT GCCTTTCGCG CAGTGATTGC CCGTTGCGTA ACCCGGGCGA CCGCTTAGGA
GAAGAAGGTA CCGGCGCACG CTTGCTGGAA GATGAACAAA ACTAA
|
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| Protein sequence | MEKKLPRIKA LLTPGEVAKR SGVAVSALHF YESKGLITSI RNSGNQRRYK RDVLRYVAII
KIAQRIGIPL ATIGEAFGVL PEGHTLSAKE WKQLSSQWRE ELDRRIHTLV ALRDELDGCI
GCGCLSRSDC PLRNPGDRLG EEGTGARLLE DEQN
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