| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_4947 |
|---|
| Symbol | malS |
|---|
| ID | 6968543 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | + |
|---|
| Start bp | 4586684 |
|---|
| End bp | 4588714 |
|---|
| Gene Length | 2031 bp |
|---|
| Protein Length | 676 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 643388630 |
|---|
| Product | periplasmic alpha-amylase precursor |
|---|
| Protein accession | YP_002273057 |
|---|
| Protein GI | 209399658 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.876495 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 0.214816 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTCG CCGCCTGTTT TCTGACACTC CTTCCTGGCT TCGCCGTTGC CGCCAGCTGG
ACTTCTCCGG GGTTCCCTGC CTTTAGCGAA CAGGGAACGG GAACATTTGT CAGCCACGCG
CAGTTGCCCA AAGGTACGCG TCCACTCACG CTAAATTTTG ACCAGCAGTG CTGGCAGCCT
GCAGATGCGA TAAAACTCAA TCAGATGCTT TCCCTGCAAC CTTGTAGCAA CACGCCGCCT
CAATGGCGAT TGTTCAGGGA CGGCAAATAT ACGCTGCAAA TAGACACCCG CTCCGGTACG
CCAACATTGA TGATTTCCAT CCAGAACGCC GCCGAACCGG TAGCAAACCT GGTCCGTGAA
TGCCCGAAAT GGGATGGATT ACCGCTCACG CTGGATGTCA GCGCCACTTT CCCGGAAGGA
GCCGCCGTAC GGGATTATTA CAGCCAGCAA ATTGCGATAG TGAAGAACGG TCAAATAACG
TTACAACCCG CTGCTACCAG CAACGGTTTA CTCCTGCTGG AACGGGCAGA AACTGACGCC
TCTGCCCCTT TCGACTGGCA TAACGCCACG GTTTACTTTG TGCTGACAGA TCGTTTCGAA
AACGGCGATC CCAGTAATGA CCAGAGTTAC GGACGTCATA AAGACGGTAT GGCGGAAATT
GGCACTTTTC ACGGCGGCGA TTTACGCGGC CTGACCAACA AACTGGATTA CCTCCAGCAG
TTGGGCGTTA ATGCTTTATG GATAAGCGCC CCATTTGAGC AAATTCACGG CTGGGTCGGC
GGCGGTACAA AAGGCGATTT CCCGCATTAT GCCTACCACG GTTATTACAC ACAGGACTGG
ACGAATCTTG ATGCCAATAT GGGCAACGAA GCCGATCTAC GGACGCTGGT TGATAGCGCA
CATCAGCGCG GTATTCGTAT TCTCTTTGAT GTCGTGATGA ACCACACCGG CTATGCCACG
CTGGCGGATA TGCAGGAGTA TCAGTTTGGC GCGTTATATC TTTCTGGTGA CGAAGTGAAA
AAAACGCTGG GTGAACGCTG GAGCGACTGG AAACCTGCCG CCGGGCAAAC CTGGCATAGC
TTTAACGATT ACATTAATTT CAGCGACAAA ACAGGCTGGG ATAAATGGTG GGGAAAAAAC
TGGATCCGTA CCGATATCGG CGATTACGAC AATCCTGGAT TCGACGATCT CACCATGTCG
CTAGCCTTTT TGCCGGATAT CAAAACCGAA TCAACTACCG CTTCTGGTCT GCCGGTGTTC
TATAAAAACA AAACGGATAC CCACGCTAAA GCCATCGACG GCTTTACCCC TCGCGATTAC
TTAACCCACT GGTTAAGTCA GTGGGTCCGC GACTATGGGA TTGATGGTTT TCGGGTCGAT
ACCGCCAAAC ATGTTGAGTT GCCCGCTTGG CAGCAACTGA AAACCGAAGC CAGCGCCGCG
CTTCGCGAAT GGAAAAAAGC TAACCCCGAC AAAGCATTAG ATGACAAACC TTTCTGGATG
ACCGGTGAAG CCTGGGGCCA CGGCGTGATG CAAAGTGACT ACTATCGCCA CGGCTTCGAT
GCGATGATCA ATTTCGATTA TCAGGAGCAG GCGGCGAAAG CTGTCGATTG TATTGCGCAG
ATGGATACGA CCTGGCAGCA AATGGCGGAG AAATTGCAGG GTTTCAACGT GTTGAGCTAC
CTCTCGTCGC ATGATACCCG TCTGTTCCGT GAAGGGGGCG ACAAAGCAGC AGAGTTATTA
CTATTAGCGC CAGGCGCGGT ACAAATCTTT TATGGCGATG AATCCTCGCG TCCGTTCGGT
CCTACAGGTT CTGATCCGCT GCAAGGTACA CGTTCGGATA TGAACTGGCA GGATGTTAGC
GGTAAATCTG CCGCCAACGT CGCGCACTGG CAGAAAATCA GCCAGTTCCG CGCCCGCCAT
CCCGCAATTG GCGCGGGCAA ACAAACGACA CTTTCGCTGA AGCAGGGCTA CGGCTTTGTT
CGTGAGCATG GCGACGATAA AGTGCTGGTC ATCTGGGCTG GGCAACAGTG A
|
|---|
| Protein sequence | MKLAACFLTL LPGFAVAASW TSPGFPAFSE QGTGTFVSHA QLPKGTRPLT LNFDQQCWQP
ADAIKLNQML SLQPCSNTPP QWRLFRDGKY TLQIDTRSGT PTLMISIQNA AEPVANLVRE
CPKWDGLPLT LDVSATFPEG AAVRDYYSQQ IAIVKNGQIT LQPAATSNGL LLLERAETDA
SAPFDWHNAT VYFVLTDRFE NGDPSNDQSY GRHKDGMAEI GTFHGGDLRG LTNKLDYLQQ
LGVNALWISA PFEQIHGWVG GGTKGDFPHY AYHGYYTQDW TNLDANMGNE ADLRTLVDSA
HQRGIRILFD VVMNHTGYAT LADMQEYQFG ALYLSGDEVK KTLGERWSDW KPAAGQTWHS
FNDYINFSDK TGWDKWWGKN WIRTDIGDYD NPGFDDLTMS LAFLPDIKTE STTASGLPVF
YKNKTDTHAK AIDGFTPRDY LTHWLSQWVR DYGIDGFRVD TAKHVELPAW QQLKTEASAA
LREWKKANPD KALDDKPFWM TGEAWGHGVM QSDYYRHGFD AMINFDYQEQ AAKAVDCIAQ
MDTTWQQMAE KLQGFNVLSY LSSHDTRLFR EGGDKAAELL LLAPGAVQIF YGDESSRPFG
PTGSDPLQGT RSDMNWQDVS GKSAANVAHW QKISQFRARH PAIGAGKQTT LSLKQGYGFV
REHGDDKVLV IWAGQQ
|
|---|
| |