Gene ECH74115_4821 details

Gene Information

• Locus tag: ECH74115_4821
• Symbol: nikR
• ID: 6970646
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli O157:H7 str. EC4115
• Kingdom: Bacteria
• Replicon accession: NC_011353
• Strand: +
• Start bp: 4456270
• End bp: 4456671
• Gene Length: 402 bp
• Protein Length: 133 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 643388513
• Product: nickel responsive regulator
• Protein accession: YP_002272941
• Protein GI: 209397817
• COG category: [K] Transcription
• COG ID: [COG0864] Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain
• TIGRFAM ID: [TIGR02793] nickel-responsive transcriptional regulator NikR

Plasmid Coverage information

• Num covering plasmid clones: 47
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 70
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCAACGAG TCACCATCAC GCTTGATGAC GATTTACTGG AGACGCTGGA CAGCCTGAGC 
CAGCGTCGTG GTTATAACAA CCGTTCCGAA GCTATCCGCG ATATTCTGCG TAGCGCCCTG 
GCGCAGGAAG CTACCCAGCA GCACGGCACA CAAGGTTTCG CGGTGCTGTC GTATGTGTAT 
GAACACGAAA AACGCGACTT AGCCAGCCGT ATTGTTTCCA CCCAGCATCA TCACCACGAC 
CTCTCCGTCG CCACGCTACA TGTGCACATC AACCACGACG ACTGTCTGGA AATCGCCGTG 
TTGAAAGGTG ACATGGGTGA CGTGCAGCAT TTTGCCGATG ACGTTATCGC CCAGCGCGGC 
GTGCGGCACG GGCATTTGCA GTGCCTGCCG AAGGAAGATT AA 

 

Protein sequence

MQRVTITLDD DLLETLDSLS QRRGYNNRSE AIRDILRSAL AQEATQQHGT QGFAVLSYVY 
EHEKRDLASR IVSTQHHHHD LSVATLHVHI NHDDCLEIAV LKGDMGDVQH FADDVIAQRG 
VRHGHLQCLP KED