| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_4690 |
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| Symbol | rpe |
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| ID | 6968857 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli O157:H7 str. EC4115 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011353 |
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| Strand | - |
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| Start bp | 4329658 |
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| End bp | 4330335 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 643388392 |
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| Product | ribulose-phosphate 3-epimerase |
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| Protein accession | YP_002272820 |
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| Protein GI | 209397258 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0036] Pentose-5-phosphate-3-epimerase |
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| TIGRFAM ID | [TIGR01163] ribulose-phosphate 3-epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.632143 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 58 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAACAGT ATTTGATTGC CCCCTCAATT CTGTCGGCTG ATTTTGCCCG CCTGGGTGAA
GATACCGCAA AAGCCCTGGC AGCTGGCGCT GATGTCGTGC ATTTTGACGT CATGGATAAC
CACTACGTTC CCAATCTGAC GATTGGGCCA ATGGTGCTGA AATCCTTGCG TAACTACGGC
ATTACCGCCC CTATCGACGT ACACCTGATG GTGAAACCGG TCGATCGCAT TGTGCCTGAT
TTCGCTGCCG CTGGTGCCAG CATCATTACC TTTCATCCAG AAGCCTCCGA GCATGTTGAC
CGCACGCTGC AACTGATTAA AGAAAATGGC TGTAAAGCGG GTCTGGTATT TAACCCGGCG
ACACCTCTGA GCTATCTGGA TTACGTGATG GATAAGCTGG ATGTGATCCT GCTGATGTCC
GTCAACCCTG GTTTCGGCGG TCAATCTTTC ATTCCTCAAA CACTGGATAA ACTGCGCGAA
GTACGTCGTC GTATCGACGA GTCTGGCTTT GACATTCGTC TGGAAGTGGA CGGTGGCGTG
AAGGTGAACA ACATTGGCGA AATCGCCGCG GCGGGCGCGG ATATGTTCGT TGCCGGTTCG
GCAATCTTCG ACCAGCCAGA CTACAAAAAA GTCATTGATG AAATGCGCAG TGAACTGGCA
AAGGTAAGTC ATGAGTAA
|
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| Protein sequence | MKQYLIAPSI LSADFARLGE DTAKALAAGA DVVHFDVMDN HYVPNLTIGP MVLKSLRNYG
ITAPIDVHLM VKPVDRIVPD FAAAGASIIT FHPEASEHVD RTLQLIKENG CKAGLVFNPA
TPLSYLDYVM DKLDVILLMS VNPGFGGQSF IPQTLDKLRE VRRRIDESGF DIRLEVDGGV
KVNNIGEIAA AGADMFVAGS AIFDQPDYKK VIDEMRSELA KVSHE
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