Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_4439 |
Symbol | garP |
ID | 6968333 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | - |
Start bp | 4115891 |
End bp | 4117225 |
Gene Length | 1335 bp |
Protein Length | 444 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 643388159 |
Product | galactarate permease GarP |
Protein accession | YP_002272596 |
Protein GI | 209400778 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2271] Sugar phosphate permease |
TIGRFAM ID | [TIGR00893] d-galactonate transporter |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 0.333242 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTCTGG ACACCGTTGA CGAAAAAAAG AAAGGCGTGC ATACCCGCTA TTTAATATTA CTGATTATTT TTATTGTTAC CGCCGTTAAC TACGCCGATC GTGCAACGCT GTCTATTGCT GGTACCGAAG TGGCAAAAGA GTTGCAGTTA AGTGCGGTTT CGATGGGTTA CATCTTTTCT GCTTTTGGCT GGGCCTACTT GCTGATGCAA ATCCCCGGCG GCTGGCTGCT TGATAAGTTT GGCTCGAAAA AAGTTTACAC CTACAGCCTC TTTTTCTGGT CGCTATTCAC CTTCCTGCAA GGCTTTGTTG ATATGTTCCC GCTGGCCTGG GCAGGGATCT CCATGTTCTT TATGCGCTTT ATGCTCGGCT TCTCGGAAGC GCCATCATTC CCGGCGAACG CCCGTATTGT CGCCGCCTGG TTCCCGACGA AAGAACGTGG TACTGCCTCC GCCATCTTTA ACTCGGCGCA ATATTTCTCG CTGGCGCTCT TTTCGCCTCT GCTTGGCTGG CTGACTTTCG CCTGGGGCTG GGAGCACGTC TTTACCGTTA TGGGGGTGAT TGGTTTTGTG CTGACGGCGC TGTGGATCAA ATTGATTCAT AACCCGACAG ATCACCCACG TATGTCTGCG GAAGAGCTGA AGTTTATCTC TGAAAATGGC GCGGTGGTCG ATATGGACCA CAAAAAGCCG GGCAGTGCGG CAGCAAGCGG ACCCAAACTG CATTACATCA AGCAATTGCT CTCTAACCGC ATGATGTTGG GCGTATTTTT CGGACAATAT TTTATCAACA CCATCACCTG GTTCTTCCTC ACCTGGTTCC CGATTTATCT GGTGCAGGAA AAAGGTATGT CGATTCTGAA AGTGGGTCTG GTCGCCTCGA TTCCAGCACT GTGTGGTTTT GCGGGCGGCG TGCTGGGAGG TGTCTTCTCG GATTATCTGA TCAAACGCGG TTTATCCCTG ACCCTGGCAC GTAAGCTACC GATTGTGCTG GGAATGTTGC TGGCTTCCAC CATCATCTTA TGTAACTACA CCAACAACAC CACGCTGGTG GTCATGCTGA TGGCGCTGGC TTTCTTTGGT AAAGGATTTG GTGCGCTGGG CTGGCCGGTG ATTTCTGACA CCGCGCCTAA AGAGATTGTT GGCCTCTGCG GCGGCGTCTT TAACGTCTTT GGCAATGTTG CCTCCATTGT CACTCCACTG GTGATTGGCT ACCTGGTAAG TGAACTGCAC TCCTTCAATG CAGCACTGGT TTTCGTGGGA TGTTCAGCGC TAATGGCGAT GGTCTGCTAC CTCTTCGTAG TTGGCGACAT TAAACGTATG GAATTGCAGA AATAA
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Protein sequence | MILDTVDEKK KGVHTRYLIL LIIFIVTAVN YADRATLSIA GTEVAKELQL SAVSMGYIFS AFGWAYLLMQ IPGGWLLDKF GSKKVYTYSL FFWSLFTFLQ GFVDMFPLAW AGISMFFMRF MLGFSEAPSF PANARIVAAW FPTKERGTAS AIFNSAQYFS LALFSPLLGW LTFAWGWEHV FTVMGVIGFV LTALWIKLIH NPTDHPRMSA EELKFISENG AVVDMDHKKP GSAAASGPKL HYIKQLLSNR MMLGVFFGQY FINTITWFFL TWFPIYLVQE KGMSILKVGL VASIPALCGF AGGVLGGVFS DYLIKRGLSL TLARKLPIVL GMLLASTIIL CNYTNNTTLV VMLMALAFFG KGFGALGWPV ISDTAPKEIV GLCGGVFNVF GNVASIVTPL VIGYLVSELH SFNAALVFVG CSALMAMVCY LFVVGDIKRM ELQK
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