| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_4430 |
|---|
| Symbol | tdcB |
|---|
| ID | 6969172 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | - |
|---|
| Start bp | 4107751 |
|---|
| End bp | 4108740 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 643388151 |
|---|
| Product | threonine dehydratase |
|---|
| Protein accession | YP_002272588 |
|---|
| Protein GI | 209396129 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1171] Threonine dehydratase |
|---|
| TIGRFAM ID | [TIGR01127] threonine dehydratase, medium form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 0.119659 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATATTA CATACGATCT GCCGGTTGCT ATTGATGACA TTATTGAAGC GAAACAACGA
CTGGCTGGGC GAATTTATAA AACAGGCATG CCTCGCTCCA ACTATTTTAG TGAACGTTGC
AAAGGTGAAA TATTCCTGAA GTTTGAAAAT ATGCAGCGTA CGGGTTCATT TAAAATTCGT
GGCGCATTTA ATAAATTAAG TTCACTGACT GATGCGGAAA AACGCAAAGG CGTGGTGGCC
TGTTCTGCGG GCAACCATGC GCAAGGGGTT TCGCTCTCCT GCGCGATGCT GGGTATCGAC
GGTAAAGTGG TGATGCCAAA AGGCGCGCCG AAATCCAAAG TAGCGGCAAC GTGCGACTAC
TCCGCAGAAG TCGTTCTGCA TGGTGATAAC TTCAACGACA CTATCGCTAA AGTGAGCGAA
ATTGTCGAAA TGGAAGGCCG TATTTTTATC CCACCTTACG ATGATCCGAA AGTGATTGCT
GGTCAGGGAA CGATTGGCCT GGAAATTATG GAAGATCTCT ATGATGTCGA TAACGTGATT
GTGCCAATTG GTGGTGGCGG TTTAATTGCT GGTATTGCGG TGGCAATTAA ATCTATTAAC
CCGACCATTC GTGTTATTGG CGTACAGTCT GAAAACGTTC ACGGCATGGC GGCTTCTTTC
CACTCCGGAG AAATAACCAC GCACCGAACT ACCGGCACCC TGGCGGATGG TTGTGATGTC
TCCCGCCCGG GTAATTTAAC TTACGAAATC GTTCGTGAAT TAGTCGATGA CATCGTGCTG
GTCAGCGAAG ACGAAATCAG AAACAGTATG ATTGCCTTAA TTCAGCGCAA TAAAGTCGTC
ACCGAAGGCG CAGGCGCTCT GGCATGTGCT GCATTATTAA GCGGTAAATT AGACCAATAT
ATTCAAAACA GAAAAACCGT CAGTATTATT TCCGGCGGCA ATATCGATCT TTCTCGCGTC
TCTCAAATCA CCGGTTTCGT TGACGCTTAA
|
|---|
| Protein sequence | MHITYDLPVA IDDIIEAKQR LAGRIYKTGM PRSNYFSERC KGEIFLKFEN MQRTGSFKIR
GAFNKLSSLT DAEKRKGVVA CSAGNHAQGV SLSCAMLGID GKVVMPKGAP KSKVAATCDY
SAEVVLHGDN FNDTIAKVSE IVEMEGRIFI PPYDDPKVIA GQGTIGLEIM EDLYDVDNVI
VPIGGGGLIA GIAVAIKSIN PTIRVIGVQS ENVHGMAASF HSGEITTHRT TGTLADGCDV
SRPGNLTYEI VRELVDDIVL VSEDEIRNSM IALIQRNKVV TEGAGALACA ALLSGKLDQY
IQNRKTVSII SGGNIDLSRV SQITGFVDA
|
|---|
| |