| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_4429 |
|---|
| Symbol | tdcC |
|---|
| ID | 6968553 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | - |
|---|
| Start bp | 4106398 |
|---|
| End bp | 4107729 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 643388150 |
|---|
| Product | threonine/serine transporter TdcC |
|---|
| Protein accession | YP_002272587 |
|---|
| Protein GI | 209398149 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0814] Amino acid permeases |
|---|
| TIGRFAM ID | [TIGR00814] serine transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 0.0929595 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACTT CAGATAGCAT TGTATCCAGC CAGACAAAAC AATCGTCCTG GCGTAAATCA
GATACCACAT GGACGTTAGG CTTGTTTGGT ACGGCAATCG GCGCCGGGGT GCTGTTCTTC
CCTATCCGCG CAGGTTTTGG CGGACTGATC CCGATTCTTC TGATGTTGGT ATTGGCATAC
CCCATCGCAT TTTATTGCCA CCGGGCGCTG GCGCGTCTGT GTCTTTCTGG CTCTAACCCT
TCCGGCAACA TTACGGAAAC GGTGGAAGAG CATTTTGGTA AAACTGGCGG CGTGGTTATC
ACGTTCCTGT ACTTCTTCGC GATTTGCCCA CTGCTGTGGA TTTATGGCGT TACTATTACC
AATACCTTTA TGACGTTCTG GGAAAACCAG CTCGGCTTTG CACCGCTGAA TCGCGGCTTT
GTGGCGCTGT TCCTGTTGCT GCTGATGGCT TTCGTCATCT GGTTTGGTAA GGATCTGATG
GTTAAAGTGA TGAGCTACCT GGTATGGCCG TTTATCGCCA GCCTGGTGCT GATTTCTTTG
TCGCTGATCC CTTACTGGAA CTCTGCAGTT ATCGACCAGG TTGACCTCGG TTCGCTGTCG
TTAACCGGTC ATGACGGTAT CCTGATCACT GTCTGGCTGG GGATTTCCAT CATGGTTTTC
TCCTTTAACT TCTCGCCAAT CGTCTCTTCC TTCGTGGTTT CTAAACGTGA AGAGTATGAG
AAAGACTTCG GTCGCGACTT CACCGAACGT AAATGTTCCC AAATCATTTC TCGTGCCAGC
ATGCTGATGG TTGCAGTGGT GATGTTCTTT GCCTTTAGCT GCCTGTTTAC GCTGTCTCCG
GCCAACATGG CGGAAGCCAA AGCGCAGAAT ATTCCAGTGC TTTCTTATCT GGCTAACCAC
TTTGCGTCCA TGACCGGTAC CAAAACAACG TTCGCGATTA CACTGGAATA TGCGGCTTCC
ATCATCGCAC TCGTGGCTAT CTTCAAATCT TTCTTCGGTC ACTATCTGGG AACGCTGGAA
GGTCTGAATG GCCTGGTCCT GAAGTTTGGT TATAAAGGCG ACAAAACTAA AGTATCGCTG
GGTAAACTGA ACACTATCAG CATGATCTTC ATCATGGGCT CCACCTGGGT TGTTGCCTAC
GCCAACCCGA ACATCCTCGA CCTGATTGAA GCCATGGGCG CACCGATTAT CGCATCCCTG
CTGTGCCTGT TGCCGATGTA TGCCATCCGT AAAGCGCCGT CTCTGGCGAA ATACCGTGGT
CGTCTGGATA ACGTGTTTGT TACCGTGATT GGTCTGCTGA CCATCCTGAA CATCGTATAT
AAACTGTTTT AA
|
|---|
| Protein sequence | MSTSDSIVSS QTKQSSWRKS DTTWTLGLFG TAIGAGVLFF PIRAGFGGLI PILLMLVLAY
PIAFYCHRAL ARLCLSGSNP SGNITETVEE HFGKTGGVVI TFLYFFAICP LLWIYGVTIT
NTFMTFWENQ LGFAPLNRGF VALFLLLLMA FVIWFGKDLM VKVMSYLVWP FIASLVLISL
SLIPYWNSAV IDQVDLGSLS LTGHDGILIT VWLGISIMVF SFNFSPIVSS FVVSKREEYE
KDFGRDFTER KCSQIISRAS MLMVAVVMFF AFSCLFTLSP ANMAEAKAQN IPVLSYLANH
FASMTGTKTT FAITLEYAAS IIALVAIFKS FFGHYLGTLE GLNGLVLKFG YKGDKTKVSL
GKLNTISMIF IMGSTWVVAY ANPNILDLIE AMGAPIIASL LCLLPMYAIR KAPSLAKYRG
RLDNVFVTVI GLLTILNIVY KLF
|
|---|
| |