| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_4013 |
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| Symbol | cse1 |
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| ID | 6968976 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli O157:H7 str. EC4115 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011353 |
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| Strand | - |
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| Start bp | 3707127 |
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| End bp | 3708689 |
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| Gene Length | 1563 bp |
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| Protein Length | 520 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 643387781 |
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| Product | CRISPR-associated protein, Cse1 family |
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| Protein accession | YP_002272224 |
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| Protein GI | 209395699 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02547] CRISPR system CASCADE complex protein CasA/Cse1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.246071 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 69 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTCGT TTTCACTTCT GACAACCCCG TGGTTGCCCG TTCGTTTTAA AGACGGAACA
ACAGGCAAGC TGGCGCCAGT CGATCTGGCG GATGAAAATG TTGTCGATAT CGCTGCGCCG
CGGGCAGATC TCCAGGGGGC GGCATGGCAG TTTTTGCTGG GGTTACTACA AAGCAGTTTC
GCGCCAAAAG ATTATCGTCG TTGGGATGAT ATCTGGGAAG ACGGGCTGGA AGCTGAAAAG
CTACGGGAAG CATTGCTGTC ATTAGAACAC CCTTTCCAGT TTGGCCCAGA TTCACCTTCA
TTTATGCAGG ATTTCGAGGT GCTCATGGGC GATAAAGTTC AGGTCGCTTC GCTACTGCCT
GAGATTCCCG GCGCTCAAAC AACGAAGTTT AATAAAGACC ACTTTATTAA GCGTGGCGTG
ACTGAACACG TATGCTCTCA TTGTTCTGCG TTAGCTCTGT TCTCCCTACA GTTAAATGCG
CCGTCAGGTG GCAAAGGCTA TCGCACCGGT TTACGCGGCG GTGGGCCGAT GACGACTCTG
ATTGAATTGC AGGAGTATCA GGGCAATCAA CAAGCCCCCT TGTGGCGCAA ACTGTGGCTC
AACGTGATGC CGCAGGATGA AGCCGACTTA CCGCTACCCA AAAAATTTGA CGATCTGGTT
TTCCCCTGGC TTGGCCCGAC GCGTACCAGC GAACTGGCCG GTGCGGTGGT AACCGATGAT
CAGGTCAATA AACTCCAGGC GTACTGGGGA ATGCCGCGGC GTATTCGTAT TGATTTTAAT
ACCACGACAG TCGGCAACTG CGATATTTGC GGTGAGCAGA GTGACGCGCT TCTGAGTTTG
ATGACTACCA AAAATTACGG TGCGAATTAT GCCATGTGGC AGCATCCCTT AACGCCTTAC
CGTGTACCAC TTAAAGAGGG CGGTGAGTTT TACTCCGTTA AACCACAACC GGGCGGTTTA
ATCTGGCGCG ACTGGTTAGG CCTTATCGAA ACGGGTAAGT CAGAAAACAA TACGGAACTT
CCCGCGCTGG TGGTGAAACT CTTTAATGCC AGCAGTCTGA AACAGGCAAA AGTGGGCCTG
TGGGGATTTG GTTATGATTT CGACAACATG AAAGCGCGCT GTTGGTACGA ACACCATTTC
CCGCTGCTGC TCAATAAAAA AGAAGGCCAG ATACCGAAGC TGCGGCTGGC TGCGCAAACG
GCTTCACGGA TTCTGAGTCT GTTACGGAGT GCATTGAAAG AAGCATGGTT CTCCGATCCA
AAAGGTGCAA GGGGTGATTT CAGTTTTGTG GATATCGACT TCTGGAACAA AACTCAGCAT
CGCTTCCTGA GGTTAGTGCG CCAAATTGAA GAAGGTCAGG ATGCGGATGA ATTACTCGGC
AAATGGCAAA AGGAAATTTG GTTATTCGCA CGTCAGGATT TTGACGAGCG TGTATTCACC
AATCCTTATG AGCCCGTTGA TTTGGAACGC GTCATGACCG CGCGCAAGAA ATATTTTACA
ACATCGGCGG AGAAGCAAAG TGCTAAAGCC GCCAGGGAGA AAAAGCAGGA GGCTGCTGAA
TGA
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| Protein sequence | MNSFSLLTTP WLPVRFKDGT TGKLAPVDLA DENVVDIAAP RADLQGAAWQ FLLGLLQSSF
APKDYRRWDD IWEDGLEAEK LREALLSLEH PFQFGPDSPS FMQDFEVLMG DKVQVASLLP
EIPGAQTTKF NKDHFIKRGV TEHVCSHCSA LALFSLQLNA PSGGKGYRTG LRGGGPMTTL
IELQEYQGNQ QAPLWRKLWL NVMPQDEADL PLPKKFDDLV FPWLGPTRTS ELAGAVVTDD
QVNKLQAYWG MPRRIRIDFN TTTVGNCDIC GEQSDALLSL MTTKNYGANY AMWQHPLTPY
RVPLKEGGEF YSVKPQPGGL IWRDWLGLIE TGKSENNTEL PALVVKLFNA SSLKQAKVGL
WGFGYDFDNM KARCWYEHHF PLLLNKKEGQ IPKLRLAAQT ASRILSLLRS ALKEAWFSDP
KGARGDFSFV DIDFWNKTQH RFLRLVRQIE EGQDADELLG KWQKEIWLFA RQDFDERVFT
NPYEPVDLER VMTARKKYFT TSAEKQSAKA AREKKQEAAE
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