| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_3352 |
|---|
| Symbol | apbE |
|---|
| ID | 6969875 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | - |
|---|
| Start bp | 3084828 |
|---|
| End bp | 3085883 |
|---|
| Gene Length | 1056 bp |
|---|
| Protein Length | 351 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 643387164 |
|---|
| Product | thiamine biosynthesis lipoprotein ApbE |
|---|
| Protein accession | YP_002271627 |
|---|
| Protein GI | 209399737 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0822228 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 76 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAATAA GCTTTACCCG CGTGGCACTG CTGGCTGCCG CGCTCTTCTT TGTTGGTTGC
GATCAAAAAC CACAACCCGC CAAAACCCAC GCTACTGAAG TTACCGTTCT TGAAGGCAAA
ACTATGGGTA CCTTCTGGCG TGCCAGCATC CCGGGCATTG ACGCCAAACG CAGCGCCGAA
CTTAAAGAAA AGATTCAGAC CCAGCTGGAC GCCGACGATC AGCTGCTTTC GACCTATAAA
AAAGATTCCG CGCTGATGCG CTTTAACGAC TCGCAAAGTT TATCGCCGTG GCCGGTAAGT
GAAGCGATGG CCGATATCGT CACCACCTCG CTACGCATTG GCGCGAAGAC CGATGGCGCG
ATGGATATAA CCGTCGGGCC GCTGGTGAAT CTGTGGGGTT TCGGTCCGGA ACAACAGCCG
GTTCAAATTC CGAGCCAGGA ACAGATCGAC GCGATGAAAG CCAAAACTGG TTTACAGCAC
CTTACGGTCA TTAATCAGTC GCATCAGCAA TATCTGCAAA AAGACCTGCC GGATTTATAT
GTCGATCTCT CCACCGTCGG CGAAGGTTAT GCGGCGGATC ACCTGGCACG CTTGATGGAG
CAGGAAGGGA TTTCCCGCTA TCTGGTGTCG GTGGGCGGCG CGCTGAACAG CCGTGGTATG
AACGGTGAAG GCCTGCCGTG GCGGGTAGCG ATTCAAAAAC CAACCGATAA AGAAAACGCG
GTTCAGGCCG TGGTGGATAT CAACGGTCAT GGGATTAGCA CCTCTGGCAG CTACCGTAAC
TATTACGAAC TGGACGGCAA ACGTCTTTCC CATGTTATCG ATCCGCAAAC CGGGCGTCCC
ATCGAACACA ATCTGGTATC CGTGACGGTG ATTGCACCGA CGGCGCTGGA AGCCGACGCC
TGGGATACAG GTTTGATGGT ACTCGGGCCG GAGAAAGCCA AAGAAGTTGT TCGCCGGGAA
GGGCTGGCGG TTTATATGAT CACCAAAGAA GGCGATAGCT TTAAAACCTG GATGTCACCA
CAGTTTAAAA GCTTCCTTGT CAGCGAAAAA AATTAA
|
|---|
| Protein sequence | MEISFTRVAL LAAALFFVGC DQKPQPAKTH ATEVTVLEGK TMGTFWRASI PGIDAKRSAE
LKEKIQTQLD ADDQLLSTYK KDSALMRFND SQSLSPWPVS EAMADIVTTS LRIGAKTDGA
MDITVGPLVN LWGFGPEQQP VQIPSQEQID AMKAKTGLQH LTVINQSHQQ YLQKDLPDLY
VDLSTVGEGY AADHLARLME QEGISRYLVS VGGALNSRGM NGEGLPWRVA IQKPTDKENA
VQAVVDINGH GISTSGSYRN YYELDGKRLS HVIDPQTGRP IEHNLVSVTV IAPTALEADA
WDTGLMVLGP EKAKEVVRRE GLAVYMITKE GDSFKTWMSP QFKSFLVSEK N
|
|---|
| |