| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_2949 |
|---|
| Symbol | |
|---|
| ID | 6970872 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | - |
|---|
| Start bp | 2724671 |
|---|
| End bp | 2725600 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 643386790 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_002271258 |
|---|
| Protein GI | 209398416 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.666822 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.000000000477709 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCAC TGCTGGATGT GTTGATGATC CTCGATGCCT TAGAAAAAGA AGGCAGTTTT
GCGGCGGCGT CGGCTAAACT CTACAAGACG CCGTCCGCTC TGAGTTACAC CGTTCACAAG
CTGGAAAGCG ACCTTAATAT TCAATTGCTT GATCGTAGCG GTCACCGCGC TAAATTCACC
CGTACCGGAA AAATGTTATT AGAGAAGGGG CGGGAAGTTC TGCATACCGT GCGAGAACTG
GAAAAGCAGG CGATCAAACT GCATGAAGGC TGGGAAAACG AGCTGGTGAT TGGCGTGGAC
GACACGTTTC CTTTTTCTCT GCTTGCGCCA CTCATTGAAG CTTTTTATCA ACATCATAAC
GTGACGCGCC TGAAGTTTAT CAATGGCGTA CTCGGTGGTT CATGGGATGC CCTGACTCAG
GGGCGAGCGG ATATTATTGT TGGCGCGATG CATGAGCCAC CATCTTCCAG TGAGTTTGGT
TTCTCGCGGT TGGGCGATCT GGAACAAGTC TTTGCGGTCG CGCCTCATCA TCCGTTAGCC
CAGGAAGAAG AACCATTAAA CCGTCGTATC ATTAAACGAT ATCGGGCGAT TGTGGTGGGG
GACACTGCGC AGGCAGGCGC TTCTACGGCC TCACAACTTC TCGACGAACA AGAAGCCATT
ACCGTTTTCG ATTTTAAAAC CAAGCTGGAG CTGCAAATTA GCGGCCTCGG CTGCGGCTAT
TTACCCCGTT ATCTGGCGCA ACGTTTTCTC GATAGTGGCG CGTTAATCGA GAAGAAAGTG
GTCGCCCAAA CTCTCTTTGA ACCCGTCTGG ATTGGCTGGA ATGAACAGAC CGCAGGACTT
GCCAGCGGCT GGTGGCGGGA TGAAATTTTA GCAAATAGTG CGATCGCCGG TGTTTATGCA
AAATCTGATG ACGGAAAATC AGCCATTTAA
|
|---|
| Protein sequence | MKPLLDVLMI LDALEKEGSF AAASAKLYKT PSALSYTVHK LESDLNIQLL DRSGHRAKFT
RTGKMLLEKG REVLHTVREL EKQAIKLHEG WENELVIGVD DTFPFSLLAP LIEAFYQHHN
VTRLKFINGV LGGSWDALTQ GRADIIVGAM HEPPSSSEFG FSRLGDLEQV FAVAPHHPLA
QEEEPLNRRI IKRYRAIVVG DTAQAGASTA SQLLDEQEAI TVFDFKTKLE LQISGLGCGY
LPRYLAQRFL DSGALIEKKV VAQTLFEPVW IGWNEQTAGL ASGWWRDEIL ANSAIAGVYA
KSDDGKSAI
|
|---|
| |