| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_1904 |
|---|
| Symbol | sohB |
|---|
| ID | 6970466 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | + |
|---|
| Start bp | 1797053 |
|---|
| End bp | 1798102 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 643385837 |
|---|
| Product | putative periplasmic protease |
|---|
| Protein accession | YP_002270326 |
|---|
| Protein GI | 209397450 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
|---|
| TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.0000000180069 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGAATTGT TGTCTGAATA TGGTTTGTTT TTGGCGAAAA TCGTTACCGT TGTGCTAGCG
ATTGCGGCGA TTGCCGCCAT TATTGTCAAT GTTGCTCAAC GTAATAAACG CCAGCGTGGC
GAGTTACGGG TCAACAATCT CAGCGAACAG TATAAGGAGA TGAAAGAAGA ACTGGCCGCG
GCGCTGATGG ACTCACATCA GCAAAAACAG TGGCACAAAG CGCAGAAGAA AAAGCACAAG
CAAGAAGCGA AAGCAGCAAA AGCGAAAGCC AAACTGGGCG AGGTGTCAAC TGACAGTAAA
CCCCGCGTCT GGGTGCTGGA CTTTAAAGGC AGCATGGACG CCCATGAAGT GAACTCGCTA
CGTGAAGAGA TAACGGCGGT ACTTGCAGCA TTCAAACCGC AGGATCAGGT TGTGCTCCGT
CTGGAAAGCC CTGGTGGCAT GGTGCATGGT TACGGGTTGG CGGCTTCGCA GCTGCAGCGT
CTGCGTGATA AAAACATTCC ATTAACTGTT ACGGTAGACA AAGTTGCTGC CAGCGGTGGT
TACATGATGG CCTGTGTGGC GGACAAAATT GTTTCCGCAC CGTTTGCTAT TGTGGGTTCC
ATTGGGGTGG TGGCGCAAAT GCCCAACTTT AACCGCTTCC TGAAAAGCAA AGATATTGAT
ATCGAACTGC ACACCGCCGG GCAGTATAAG CGTACGCTGA CCTTGCTGGG TGAAAATACC
GAAGAAGGGC GGGAGAAATT CCGCGAAGAG CTGAACGAAA CGCATCAGTT ATTTAAAGAT
TTTGTGAAGC GTATGCGTCC GTCTCTGGAT ATTGAACAGG TGGCAACGGG TGAACACTGG
TACGGACAAC AGGCGGTAGA GAAGGGCCTG GTTGATGAAA TCAACACCAG TGATGAAGTT
ATTCTTAGCC TGATGGAAGG CCGAGAAGTG GTCAATGTAC GCTATATGCA GCGTAAACGA
CTCATTGACC GATTCACCGG CAGCGCGGCA GAGAGCGCCG ATCGATTATT GCTACGCTGG
TGGCAGCGTG GGCAAAAGCC ATTGATGTAA
|
|---|
| Protein sequence | MELLSEYGLF LAKIVTVVLA IAAIAAIIVN VAQRNKRQRG ELRVNNLSEQ YKEMKEELAA
ALMDSHQQKQ WHKAQKKKHK QEAKAAKAKA KLGEVSTDSK PRVWVLDFKG SMDAHEVNSL
REEITAVLAA FKPQDQVVLR LESPGGMVHG YGLAASQLQR LRDKNIPLTV TVDKVAASGG
YMMACVADKI VSAPFAIVGS IGVVAQMPNF NRFLKSKDID IELHTAGQYK RTLTLLGENT
EEGREKFREE LNETHQLFKD FVKRMRPSLD IEQVATGEHW YGQQAVEKGL VDEINTSDEV
ILSLMEGREV VNVRYMQRKR LIDRFTGSAA ESADRLLLRW WQRGQKPLM
|
|---|
| |