Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_1464 |
Symbol | rluC |
ID | 6972195 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | + |
Start bp | 1447632 |
End bp | 1448591 |
Gene Length | 960 bp |
Protein Length | 319 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 643385437 |
Product | 23S rRNA pseudouridylate synthase C |
Protein accession | YP_002269931 |
Protein GI | 209400210 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00000220754 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.00000000172116 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAAAACAG AGACTCCATC CGTAAAAATT GTTGCTATCA CCGCCGACGA AGCGGGGCAA CGTATCGACA ACTTTTTGCG TACCCAATTG AAAGGCGTAC CAAAAAGTAT GATTTACCGT ATTTTGCGTA AAGGCGAAGT GCGGGTGAAC AAAAAACGTA TTAAGCCTGA ATATAAACTC GAAGCGGGTG ATGAGGTGCG TATTCCACCG GTTCGCGTTG CTGAGCGGGA AGAAGAGGCG GTTTCGCCAC ATCTGCAAAA GGTGGCGGCG CTGGCGGACG TCATCTTATA TGAAGATGAT CACATCCTGG TGCTGAATAA ACCTTCCGGT ACGGCGGTAC ATGGCGGCAG TGGTTTAAGC TTCGGCGTTA TTGAAGGTTT GCGGGCGTTG CGCCCGGAAG CGCGGTTCCT TGAACTGGTT CATCGTCTTG ACCGGGACAC CTCAGGTGTG TTGCTGGTAG CGAAAAAACG CTCGGCGTTG CGTTCTCTGC ATGAGCAATT ACGTGAAAAA GGGATGCAAA AAGATTACCT GGCGCTGGTG CGCGGTCAGT GGCAGTCGCA TGTGAAGAGC GTTCAGGCGC CGTTATTGAA AAATATTCTG CAAAGCGGCG AACGTATCGT GCGTGTGAGT CAGGAAGGCA AACCGTCGGA AACACGCTTT AAAGTGGAAG AACGCTATGC ATTTGCCACC CTGGTGCGTT GTAGTCCGGT AACAGGGCGC ACTCATCAGA TCCGTGTGCA TACACAGTAT GCAGGTCATC CGATTGCCTT TGACGATCGC TACGGTGACC GTGAATTTGA CAGACAGCTC ACTGAAGCAG GCACGGGATT AAATCGTCTG TTCCTGCACG CCGCAGCGTT GAAGTTTACC CATCCGGGGA CCGGTGAGGT GATGCGTATC GAAGCGCCGA TGGATGATGG TTTGAAGCGT TGTTTGCAAA AGCTGCGTAA CGCGCGCTAA
|
Protein sequence | MKTETPSVKI VAITADEAGQ RIDNFLRTQL KGVPKSMIYR ILRKGEVRVN KKRIKPEYKL EAGDEVRIPP VRVAEREEEA VSPHLQKVAA LADVILYEDD HILVLNKPSG TAVHGGSGLS FGVIEGLRAL RPEARFLELV HRLDRDTSGV LLVAKKRSAL RSLHEQLREK GMQKDYLALV RGQWQSHVKS VQAPLLKNIL QSGERIVRVS QEGKPSETRF KVEERYAFAT LVRCSPVTGR THQIRVHTQY AGHPIAFDDR YGDREFDRQL TEAGTGLNRL FLHAAALKFT HPGTGEVMRI EAPMDDGLKR CLQKLRNAR
|
| |