Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_1463 |
Symbol | rne |
ID | 6966711 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | - |
Start bp | 1443874 |
End bp | 1447059 |
Gene Length | 3186 bp |
Protein Length | 1061 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 643385436 |
Product | ribonuclease E |
Protein accession | YP_002269930 |
Protein GI | 209400957 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00215249 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.000000103406 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAAAGAA TGTTAATCAA CGCAACTCAG CAGGAAGAGT TGCGCGTTGC CCTTGTAGAT GGGCAGCGTC TGTATGACCT GGATATCGAA AGTCCAGGGC ACGAGCAGAA AAAGGCAAAC ATCTACAAAG GTAAAATCAC CCGCATTGAA CCGAGTCTGG AAGCTGCTTT TGTTGATTAC GGCGCTGAAC GTCACGGTTT CCTCCCACTA AAAGAAATTG CCCGCGAATA TTTCCCTGCT AACTACAGTG CTCATGGTCG TCCCAACATT AAAGATGTGT TGCGTGAAGG TCAGGAAGTC ATTGTTCAGA TCGATAAAGA AGAGCGCGGC AACAAAGGCG CGGCATTAAC CACCTTTATC AGTCTGGCGG GTAGCTATCT GGTTCTGATG CCGAACAACC CGCGCGCGGG TGGCATTTCT CGCCGTATCG AAGGCGACGA CCGTACCGAA TTAAAAGAAG CACTGGCAAG CCTTGAACTG CCGGAAGGCA TGGGGCTTAT CGTGCGCACC GCTGGCGTCG GCAAATCTGC TGAGGCGCTG CAATGGGATT TAAGCTTCCG TCTGAAACAC TGGGAAGCCA TCAAAAAAGC CGCTGAAAGC CGCCCGGCCC CGTTCCTGAT TCATCAGGAG AGCAACGTAA TCGTTCGCGC ATTCCGCGAT TACTTACGTC AGGACATCGG CGAAATCCTT ATCGATAACC CGAAAGTGCT CGAACTGGCA CGTCAGCATA TCGCTGCATT AGGTCGCCCG GATTTCAGCA GCAAAATCAA ACTGTACACC GGCGAGATCC CGCTGTTCAG CCACTACCAG ATCGAGTCGC AGATCGAGTC CGCCTTCCAG CGTGAAGTCC GTCTGCCATC CGGTGGTTCG ATTGTTATCG ACAGCACCGA AGCGTTAACG GCCATCGACA TCAACTCCGC ACGCGCGACC CGCGGCGGCG ATATCGAAGA AACCGCGTTT AACACTAACC TCGAAGCTGC CGATGAGATT GCTCGTCAGC TGCGCCTGCG TGACCTCGGC GGCCTGATTG TTATCGACTT CATCGACATG ACGCCAGTAC GCCACCAGCG TGCGGTAGAA AACCGTCTGC GTGAAGCGGT GCGTCAGGAC CGTGCGCGTA TTCAAATCAG CCATATTTCT CGCTTTGGCC TGCTGGAAAT GTCCCGCCAG CGCCTGAGCC CATCACTGGG TGAATCCAGT CATCACGTTT GTCCGCGTTG TTCTGGTACT GGCACCGTGC GTGACAACGA ATCGCTGTCG CTCTCTATTC TGCGTCTGAT CGAAGAAGAA GCGCTGAAAG AGAACACCCA GGAAGTTCAC GCCATTGTTC CTGTGCCAAT CGCTTCTTAC CTGCTGAATG AAAAACGTTC TGCGGTAAAT GCCATTGAAA CTCGTCAGGA CGGTGTGCGC TGTGTAATTG TGCCAAACGA TCAGATGGAA ACCCCGCACT ACCACGTGCT GCGCGTGCGT AAAGGGGAAG AAACCCCAAC CTTAAGCTAC ATGCTGCCGA AGCTGCATGA AGAAGCGATG GCGCTGCCGT CTGAAGAAGA GTTCGCTGAA CGTAAGCGTC CGGAACAACC TGCGCTGGCA ACCTTTGCCA TGCCGGATGT GCCGCCAGCG CCAACGCCAG CTGAACCTGC CGCGCCTGTT GTAGCCCCAG CACCGAAAGC TGCACCGGCA ACACCAGCAA CTCCTGCACA ACCTGGGCTG TTGAGCCGCT TCTTCGGCGC ACTGAAAGCG CTGTTCAGCG GTGGTGAAGA AACCAAACCG ACCGAGCAAC CAGCACCGAA AGCAGAAGCG AAACCGGAAC GTCAACAGGA TCGTCGCAAG CCTCGTCAGA ACAACCGCCG TGACCGTAAT GAGCGCCGCG ACACCCGTAG TGAACGTACT GAAGGCAGCG ATAATCGCGA AGAAAACCGT CGTAATCGTC GCCAAGCACA GCAGCAGACT GCCGAGACGC GTGAGGGCCG TCAGCAGGCT GAGGTAACGG AAAAAGCGCG TACCGCCGAC GAGCAGCAAG CGCCGCGTCG TGAACGTAGC CGCCGCCGTA ACGATGATAA ACGTCAGGCG CAACAAGAAG CGAAGGCGCT GAATGTTGAA GAGCAATCTG TTCAGGAAAC CGAACAGGAA GAACGTGTAC GTCCGGTTCA GCCGCGTCGT AAACAGCGTC AGCTCAATCA GAAAGTGCGT TACGAGCAAA GCGTAGCCGA AGAAACGGTA GTCGCACCGG TAGCTGAAGA AACTGTCGCT GCCGAACCAA TTGTTCAGGA AGCGCCAGCT CCACGCACAG AACTGGTGAA AGTCCCGCTG CCAGTCGTAG CGCAAACTGC ACCAGAACAG CAAGAAGAGA ACAATGCTGA TAACCGTGAC AACGGTGGCA TGCCGCGTCG TTCTCGCCGC TCGCCTCGTC ACCTGCGCGT GAGTGGTCAG CGTCGTCGTC GCTATCGTGA CGAGCGTTAT CCAACCCAAT CGCCAATGCC GTTGACCGTA GCGTGCGCGT CTCCGGAACT GGCCTCTGGC AAAGTCTGGA TCCGCTATCC GATTGTACGT CCACAAGATG TACAGGTTGA AGAGCAGCGC GAACAGGAAG AAGTGCAAGT GCAGCCGATG GTGACTGAGG TCCCTGTCGC CGCCGCTGTC GAACCGGTTG TTAGCGCGCC AGTTGTTGAA GAAATGGCTG AAGTCGTAGA AGCCCCCGTA CCGGTTGCCG AACCGCAACC GGAAGTGGTT GAAACGACGC ATCCTGAAGT GATTGCCGCC GCGGTAACTG AACAGCCGCA GGTGATTACC GAGTCTGATG TTGCCGTAGC CCAGGAAGTT GCAGAACACG CAGAACCGGT GGTTGAACCG CAGGAAGAGA CGGCAGATAT TGAAGAAGTT GCCGAAACTG CTGAGGTTGT GGTTGCTGAA CCTGAAGTTG TTGCTCAACC TGCCGCGCCA GTCGTCGCTG AAGTCGCAGC AGAAGTTGAA ACGGTAACCG CGGTTAAACC AGAGATCACC GTTGAGCATA ACCACGCTAC CGCGCCAATG ACGCGCGCTC CGGCACCGGA ATATGTTCCG GAGGCACCGC GTCACAGTGA CTGGCAGCGC CCTACTTTTG CCTTCGAAGG TAAAGGTGCC GCAGGTGGTC ATACGGCAAC GCATCATGCC TCTGCCGCTC CTGCGCGTCC GCAACCTGTT GAGTAA
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Protein sequence | MKRMLINATQ QEELRVALVD GQRLYDLDIE SPGHEQKKAN IYKGKITRIE PSLEAAFVDY GAERHGFLPL KEIAREYFPA NYSAHGRPNI KDVLREGQEV IVQIDKEERG NKGAALTTFI SLAGSYLVLM PNNPRAGGIS RRIEGDDRTE LKEALASLEL PEGMGLIVRT AGVGKSAEAL QWDLSFRLKH WEAIKKAAES RPAPFLIHQE SNVIVRAFRD YLRQDIGEIL IDNPKVLELA RQHIAALGRP DFSSKIKLYT GEIPLFSHYQ IESQIESAFQ REVRLPSGGS IVIDSTEALT AIDINSARAT RGGDIEETAF NTNLEAADEI ARQLRLRDLG GLIVIDFIDM TPVRHQRAVE NRLREAVRQD RARIQISHIS RFGLLEMSRQ RLSPSLGESS HHVCPRCSGT GTVRDNESLS LSILRLIEEE ALKENTQEVH AIVPVPIASY LLNEKRSAVN AIETRQDGVR CVIVPNDQME TPHYHVLRVR KGEETPTLSY MLPKLHEEAM ALPSEEEFAE RKRPEQPALA TFAMPDVPPA PTPAEPAAPV VAPAPKAAPA TPATPAQPGL LSRFFGALKA LFSGGEETKP TEQPAPKAEA KPERQQDRRK PRQNNRRDRN ERRDTRSERT EGSDNREENR RNRRQAQQQT AETREGRQQA EVTEKARTAD EQQAPRRERS RRRNDDKRQA QQEAKALNVE EQSVQETEQE ERVRPVQPRR KQRQLNQKVR YEQSVAEETV VAPVAEETVA AEPIVQEAPA PRTELVKVPL PVVAQTAPEQ QEENNADNRD NGGMPRRSRR SPRHLRVSGQ RRRRYRDERY PTQSPMPLTV ACASPELASG KVWIRYPIVR PQDVQVEEQR EQEEVQVQPM VTEVPVAAAV EPVVSAPVVE EMAEVVEAPV PVAEPQPEVV ETTHPEVIAA AVTEQPQVIT ESDVAVAQEV AEHAEPVVEP QEETADIEEV AETAEVVVAE PEVVAQPAAP VVAEVAAEVE TVTAVKPEIT VEHNHATAPM TRAPAPEYVP EAPRHSDWQR PTFAFEGKGA AGGHTATHHA SAAPARPQPV E
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