Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_1222 |
Symbol | ymcC |
ID | 6967386 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | - |
Start bp | 1232852 |
End bp | 1233496 |
Gene Length | 645 bp |
Protein Length | 214 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 643385217 |
Product | group 4 capsule (G4C) polysaccharide, lipoprotein YmcC |
Protein accession | YP_002269712 |
Protein GI | 209399944 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0000233631 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 66 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCGCCCTC TTATTTTATC GATTTTCGCA CTATTTCTTG CGGGATGTAC GCACAGCCAG CAAAGTATGG TCGATACATT TCGCGCCAGC CTTTTCGATA ATCAGGATAT CACCGTAGCG GATCAGCAGA TCCAGGCGTT GCCTTATTCC ACGATGTATT TACGCCTTAA TGAAGGGCAA CGAATCTTTG TGGTACTGGG ATATATAGAA CAAGAACAAA GCAAATGGTT ATCCCAGGAT AACGCCATGC TGGTTACCCA CAATGGACGT CTTTTAAAGA CCGTCAAACT TAATAATAAT CTGCTGGAAG TGACAAATTC CGGGCAGGAC CCTCTGCGTA ACGCGCTGGC AATAAAAGAC GGCAGCCGCT GGACGCGCGA TATTCTCTGG AGTGAAGACA ACCATTTTCG CTCTGCGACC CTGAGTTCCA CTTTTTCCTT TGCTGGATTA GAGACGCTGC ATATTGCGGG TCGCGATGTG CTGTGTAATG TCTGGCAGGA AGAGGTGACT TCCACGCTAC CAGAAAAACA GTGGCAAAAC ACATTCTGGG TCGATTCGGC TACTGGCCAG GTTCGTCAAA GTCGGCAAAT GTTAGGCGCA GGGGTTATTC CCGTAGAAAT GACGTTTCTT AAACCCGCAC CATGA
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Protein sequence | MRPLILSIFA LFLAGCTHSQ QSMVDTFRAS LFDNQDITVA DQQIQALPYS TMYLRLNEGQ RIFVVLGYIE QEQSKWLSQD NAMLVTHNGR LLKTVKLNNN LLEVTNSGQD PLRNALAIKD GSRWTRDILW SEDNHFRSAT LSSTFSFAGL ETLHIAGRDV LCNVWQEEVT STLPEKQWQN TFWVDSATGQ VRQSRQMLGA GVIPVEMTFL KPAP
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