| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_1041 |
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| Symbol | cspD |
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| ID | 6966723 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli O157:H7 str. EC4115 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011353 |
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| Strand | - |
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| Start bp | 1056797 |
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| End bp | 1057021 |
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| Gene Length | 225 bp |
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| Protein Length | 74 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 643385054 |
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| Product | stationary phase/starvation inducible regulatory protein CspD |
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| Protein accession | YP_002269554 |
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| Protein GI | 209400231 |
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| COG category | [K] Transcription |
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| COG ID | [COG1278] Cold shock proteins |
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| TIGRFAM ID | [TIGR02381] cold shock domain protein CspD |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000029024 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 64 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAAAAGG GTACTGTTAA GTGGTTCAAC AATGCCAAAG GGTTTGGTTT CATCTGCCCT
GAAGGCGGCG GCGAAGATAT TTTCGCTCAT TATTCCACCA TTCAGATGGA TGGTTACAGA
ACGCTAAAAG CTGGACAATC CGTTCAGTTT GATGTCCACC AGGGGCCAAA AGGCAATCAC
GCCAGTGTTA TTGTGCCCGT CGAAGTAGAA GCGGCAGTCG CATAG
|
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| Protein sequence | MEKGTVKWFN NAKGFGFICP EGGGEDIFAH YSTIQMDGYR TLKAGQSVQF DVHQGPKGNH
ASVIVPVEVE AAVA
|
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