Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_0527 |
Symbol | ppiD |
ID | 6970335 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | + |
Start bp | 531553 |
End bp | 533424 |
Gene Length | 1872 bp |
Protein Length | 623 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 643384574 |
Product | peptidyl-prolyl cis-trans isomerase (rotamase D) |
Protein accession | YP_002269088 |
Protein GI | 209395856 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0760] Parvulin-like peptidyl-prolyl isomerase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00679494 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 51 |
Fosmid unclonability p-value | 0.63338 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGGACA GCTTACGCAC GGCTGCAAAC AGTCTCGTGC TCAAGATTAT TTTCGGTATC ATTATCGTGT CGTTCATATT GACCGGCGTG AGTGGTTACC TGATTGGCGG AGGCAATAAC TACGCCGCAA AAGTGAATGA CCAGGAAATC AGCCGTGGGC AATTCGAGAA TGCCTTCAAC AGCGAGCGTA ATCGCATGCA GCAACAGCTG GGCGATCAAT ACTCCGAGCT GGCAGCGAAC GAAGGCTATA TGAAAACCCT GCGTCAACAG GTGCTGAATC GTCTGATCGA CGAGGCGCTG CTGGATCAGT ACGCACGTGA GCTGAAACTG GGTATCAGCG ATGAGCAGGT TAAACAGGCG ATTTTCGCGA CCCCAGCCTT CCAGGTTGAT GGCAAATTTG ATAACAGCCG CTATAACGGT ATCCTCAACC AGATGGGGAT GACCGCCGAT CAGTACGCCC AGGCGCTGCG TAACCAGCTC ACTACCCAAC AGCTGATTAA CGGCGTTGCT GGTACCGATT TTATGCTGAA AGGTGAAACC GACGAGCTGG CGGCACTGGT CGCTCAACAA CGCGTGGTGC GTGAAGCGAC TATCGATGTT AACGCGCTGG CGGCGAAGCA GCCTGTGACC GAACAGGAAA TTGCCAGCTA CTACGAACAA AACAAAAACA ATTTCATGAC GCCGGAACAA TTCCGCGTGA GTTACATCAA GCTGGATGCC GCAACGATGC AGCAACCGGT TAGCGATGCG GATCTCCAGA GCTACTACGA TCAGCATCAG GATCAATTCA CCCAGCCGCA GCGTACCCGT TACAGCATCA TCCAGACCAA AACTGAAGAT GAAGCGAAAG CGGTACTTGA TGAGCTGAAT AAAGGCGGTG ATTTTGCTGC ATTAGCCAAA GAAAAATCTG CCGATATTAT CTCTGCTCGT AACGGCGGCG ATATGGGTTG GTTAGAAGAT GCCACTATCC CGGATGAACT GAAAAATGCT GGTCTGAAAG AAAAAGGCCA ACTGTCTGGT GTCATCAAAT CTTCGGTCGG TTTCCTGATT GTACGTCTGG ACGACATTCA GCCAGCGAAA GTGAAATCGT TAGACGAAGT ACGTGACGAT GTCGCGGCGA AAGTGAAACA CGAAAAAGCC CTCGATGCGT ACTACGCGCT GCAGCAGAAA GTGAGCGATG CGGCAAGCAA CGACACCGAG TCTCTGGCCG GTGCAGAGCA AGCTGCCGGC GTTAAAGCCA CTCAGACGGG TTGGTTCAGC AAAGAGAACC TGCCGGAAGA GTTGAACTTC AAGCCGGTTG CTGACGCTAT CTTTAACGGC GGTCTGGTAG GTGAAAACGG CGCGCCGGGC ATCAACTCTG ACATCATCAC CGTAGACGGC GACCGCGCAT TCGTGCTGCG CATCAGCGAG CACAAACCGG AAGCGGTGAA ACCGTTGGCA GATGTTCAGG AACAAGTTAA GGCACTGGTT CAGCACAACA AAGCTGAACA ACAGGCGAAA GTGGATGCTG AGAAACTGCT GGTTGATTTG AAAGCCGGCA AAGGTGCGGA AGCTATGCAG GCTGCCGGTC TGAAATTTGG CGAGCCGAAA ACCTTAAGCC GTTCCGGTCG TGACCCGATT AGCCAGGCGG CGTTTGCACT GCCACTGCCA GCGAAAGACA AACCGAGCTA CGGTATGGCG ACCGATATGC AAGGTAATGT GGTTCTGCTG GCGCTGGATG AAGTGAAACA AGGTTCAATG CCGGAAGATC AGAAAAAAGC GATGGTGCAG GGTATCACCC AGAACAACGC ACAAATCGTC TTTGAAGCTC TGATGAGTAA CCTGCGTAAA GAGGCGAAAA TCAAAATTGG CGATGCGTTG GAACAGCAAT AA
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Protein sequence | MMDSLRTAAN SLVLKIIFGI IIVSFILTGV SGYLIGGGNN YAAKVNDQEI SRGQFENAFN SERNRMQQQL GDQYSELAAN EGYMKTLRQQ VLNRLIDEAL LDQYARELKL GISDEQVKQA IFATPAFQVD GKFDNSRYNG ILNQMGMTAD QYAQALRNQL TTQQLINGVA GTDFMLKGET DELAALVAQQ RVVREATIDV NALAAKQPVT EQEIASYYEQ NKNNFMTPEQ FRVSYIKLDA ATMQQPVSDA DLQSYYDQHQ DQFTQPQRTR YSIIQTKTED EAKAVLDELN KGGDFAALAK EKSADIISAR NGGDMGWLED ATIPDELKNA GLKEKGQLSG VIKSSVGFLI VRLDDIQPAK VKSLDEVRDD VAAKVKHEKA LDAYYALQQK VSDAASNDTE SLAGAEQAAG VKATQTGWFS KENLPEELNF KPVADAIFNG GLVGENGAPG INSDIITVDG DRAFVLRISE HKPEAVKPLA DVQEQVKALV QHNKAEQQAK VDAEKLLVDL KAGKGAEAMQ AAGLKFGEPK TLSRSGRDPI SQAAFALPLP AKDKPSYGMA TDMQGNVVLL ALDEVKQGSM PEDQKKAMVQ GITQNNAQIV FEALMSNLRK EAKIKIGDAL EQQ
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