| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_0073 |
|---|
| Symbol | tbpA |
|---|
| ID | 6969330 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | - |
|---|
| Start bp | 79297 |
|---|
| End bp | 80280 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 643384153 |
|---|
| Product | thiamine transporter substrate binding subunit |
|---|
| Protein accession | YP_002268676 |
|---|
| Protein GI | 209399031 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4143] ABC-type thiamine transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR01254] ABC transporter periplasmic binding protein, thiB subfamily
[TIGR01276] thiamine ABC transporter, periplasmic binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 63 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTAAAAA AATGTCTTCC CCTGCTGTTG CTGTGCACAG CGCCCGTTTT CGCTAAACCC
GTTCTGACTG TTTATACCTA CGATTCCTTC GCCGCCGACT GGGGGCCTGG TCCGGTGGTT
AAAAAAGCCT TTGAAGCCGA CTGTAATTGC GAACTGAAAC TGGTGGCGCT GGAAGATGGC
GTTTCGCTTC TCAACCGTCT ACGGATGGAA GGCAAAAACA GTAAAGCCGA TGTGGTGCTG
GGGCTGGATA ACAATCTGTT AGACGCCGCC AGTAAAACCG GACTGTTTGC CAAAAGCGGT
GTGGCAGCGG ATGCCGTTAA CGTTCCCGGC GGCTGGAATA ATGACATTTT CGTACCGTTT
GATTATGGCT ACTTCGCCTT CGTTTATGAC AAGAACAAAC TGAAAAACCC GCCACAAAGC
CTGAAAGAAC TGGTTGAGAG CGATCAAAAC TGGCGGGTGA TTTATCAGGA TCCGCGCACC
AGTACACCGG GGCTGGGTCT GTTGCTATGG ATGCAAAAAG TCTATGGCGA TGACGCCCCA
CAAGCCTGGC AGAAACTGGC GAAGAAAACG GTCACGGTCA CCAAAGGCTG GAGCGAAGCC
TACGGCCTGT TTTTAAAAGG TGAAAGCGAT CTGGTACTGA GTTACACCAC CTCTCCGGCT
TATCACATTC TCGAAGAGAA GAAAGATAAC TACGCCGCCG CGAACTTCAG CGAAGGTCAC
TATCTGCAAG TGGAAGTCGC CGCTCGCACC GCTGCCAGCA AGCAGCCGGA GCTGGCGCAA
AAATTCCTCC AGTTTATGGT TTCTCCGGCT TTCCAGAATG CGATCCCAAC CGGCAACTGG
ATGTATCCGG TGGCAAACGT CACGCTGCCT GCCGGTTTTG AAAAATTGAC CAAACCCGCA
ACCACGCTGG AGTTCACGCC AGCCGAAGTG GCGGCACAAC GTCAGGCATG GATTAGCGAA
TGGCAACGCG CCGTCAGCCG TTAA
|
|---|
| Protein sequence | MLKKCLPLLL LCTAPVFAKP VLTVYTYDSF AADWGPGPVV KKAFEADCNC ELKLVALEDG
VSLLNRLRME GKNSKADVVL GLDNNLLDAA SKTGLFAKSG VAADAVNVPG GWNNDIFVPF
DYGYFAFVYD KNKLKNPPQS LKELVESDQN WRVIYQDPRT STPGLGLLLW MQKVYGDDAP
QAWQKLAKKT VTVTKGWSEA YGLFLKGESD LVLSYTTSPA YHILEEKKDN YAAANFSEGH
YLQVEVAART AASKQPELAQ KFLQFMVSPA FQNAIPTGNW MYPVANVTLP AGFEKLTKPA
TTLEFTPAEV AAQRQAWISE WQRAVSR
|
|---|
| |