Gene VSAL_II1066 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVSAL_II1066 
SymbolspeF 
ID6962377 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAliivibrio salmonicida LFI1238 
KingdomBacteria 
Replicon accessionNC_011313 
Strand
Start bp1159759 
End bp1161951 
Gene Length2193 bp 
Protein Length730 aa 
Translation table11 
GC content38% 
IMG OID643382308 
Productornithine decarboxylase 
Protein accessionYP_002265339 
Protein GI209809800 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1982] Arginine/lysine/ornithine decarboxylases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.585058 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAATT TAAGTATTGC GATAAGTAAT AATCTTGGTG ATTACTTCAT GCCTCTCGCT 
GATATGTTGG TTGAAACGTT TAACCGAGAA TTAAGACCGA TTGATACTGT CGCATTAACG
GATGTGAGTG CTGTTATTCT TTCCCTTGAT GATGTGTCAG GTAAGGTACA TCAACAAATT
GAAGAAACGT GTTATGGCAT TCCAGTTTTT GTTATTTGTG GTGATGGTAC TCGCCAACTT
TGCTCTTGTG ATTATGCAAA AGTAACCAGT GTTATTGATT TAACTCAACA ATCTATCTCA
TATTATTGTC GTCAAATTAA CGAAGCTGCT CATAAATACG AATCAAAAGT GTTGCCACCA
TTTTTTGAAA AAATAACCCG GTATGTTGAT CAAGGGAATG CGGCGTTTGA TTGTCCCGGA
CACCAAGGAG GACAGTTTTT CAAAAAACAC CATGCTGGTA AACAGTTTTA TGATTTCTTT
GGCGAGAATT TATTTCGAAG TGATTTATGT AATGCGGATG TGGCATTAGG GGATTTGTTA
ATCCATGAAG GTCATGCGTG TGCAGCACAA AAACACGCAG CAAAAGTGTT TAATGCAGAT
AAAACGTACT TTGTTCTTAA TGGGACATCT GCATCAAACA AGGTTGCTTG TAATGCAATT
TTAACTCCGG GAGATTTGGT GCTATTTGAC CGAAATAACC ATAAATCAAA TCATCACGGT
GCGTTATTTC AAGCGGGTGG GATTCCTGTT TATTTAGAAA CAGCTCGAAA TCCATACGGA
TTTATTGGTG GCATTGATGA ACATTGTTTT GATGAAAGTT ATATTCGCGG TCAAATTGCA
AAAACAGATC CAGAAAGAGC AAAAGAAGAA CGTCCATTCA GAATGGCGAT TATTCAACTA
GGAACCTACG ACGGTACGAT TTATAACGCG CGTTTTGTAA TGGATAAAAT TGGCCACTTA
TGTGACTACA TTTTATTTGA TTCTGCATGG GTAGGCTACG AGCAATTTAT TCCAATGATG
AAAGATTGCT CTCCATTATT GTTGGATTTA AAACCTGAAG ATGCAGGTGT TTTGGTTACT
CAATCGGTTC ATAAGCAACA AGCTGGTTTT TCTCAAACCT CCCAAATCCA TAAAAAAGAC
CGTCATATCA AAGGACAAGC TCGTTACTGT AATCATAAAC GCTTTAATAA TGCCTTCATG
ATGCATGCGT CAACCAGCCC ATTTTATGCT TTATTCTCAG CATTAGATGT GAATGCCAAA
ATTCATGATG GTGCATCTGG CCGTAAGTTA TGGCATGAGT GTGTAAAAAT TGGTATTGAA
ACGCGTAAAG AATTATTGAA TAGCTGTGAA TATATTACGC CATTTATTCC TGAAATAGTT
GATGGCCAAT TATGGCAGGA CTATGACACG GAATTAATTG CAAATGAGAA AAAATTCTTC
TTATTTAATC CTGAAGACAC ATGGCACAAA TTTGAAGGTT ACGGTAAGGA ACAATACTTT
GTTGATCCAT GTAAATTGTT ATTAACGACA GCGGGGATTA ATGAACACGG GGATTATGCT
GAATTTGGTA TTCCAGCAAC GCTACTCGCT AACTTCTTAC GTGAAAATGG CATTGTTCCT
GAGAAGTGTG ATTTGAATTC TATTTTGTTC TTGCTTACAC CTGCTGAAGA CATGGCAAAA
ATGCACCAAC TGGTGGCGCA AATTAATCGC TTCGAACAAT TTGTGAAAGA AGATGCTCCA
TTGCAAGTGG TGTTACCAAC CGTGTATGAA GCAAATAAAG ATCGTTATAA AGGTTATACA
ATTCAACAGT TATGTCTTGA AATGCATAAT ATGTACCGTG AGTTGAATGT AAAAGAGCTG
CAACGTTGTA TGTTCCGTGA GGCCTATTTC CCTGAAATGA AAATGCTTCC TCAACAAGCA
AACACTCAGT ATTTCCGTGG AGAGTGTGAA TACGTAGAAC TGAAAGAAGC AACGGGACGA
ATCGCCGCTG AAGGTGCACT TCCTTATCCT CCGGGTGTGC TATGTGTGAT CCCTGGAGAA
GCGTGGACCA GCCAAGTTAC CCAATACTTC TTAGCATTAG AAGAGGGGAT TAACCAGTTC
CCAGGATTCG CTCCTGAAAT TCAAGGTGTT TATTTAGAAG AAGTAAATGG CCGAACTACC
GCATTTTGTT ATGTCCTTAA CGAATCAAAC TAA
 
Protein sequence
MKNLSIAISN NLGDYFMPLA DMLVETFNRE LRPIDTVALT DVSAVILSLD DVSGKVHQQI 
EETCYGIPVF VICGDGTRQL CSCDYAKVTS VIDLTQQSIS YYCRQINEAA HKYESKVLPP
FFEKITRYVD QGNAAFDCPG HQGGQFFKKH HAGKQFYDFF GENLFRSDLC NADVALGDLL
IHEGHACAAQ KHAAKVFNAD KTYFVLNGTS ASNKVACNAI LTPGDLVLFD RNNHKSNHHG
ALFQAGGIPV YLETARNPYG FIGGIDEHCF DESYIRGQIA KTDPERAKEE RPFRMAIIQL
GTYDGTIYNA RFVMDKIGHL CDYILFDSAW VGYEQFIPMM KDCSPLLLDL KPEDAGVLVT
QSVHKQQAGF SQTSQIHKKD RHIKGQARYC NHKRFNNAFM MHASTSPFYA LFSALDVNAK
IHDGASGRKL WHECVKIGIE TRKELLNSCE YITPFIPEIV DGQLWQDYDT ELIANEKKFF
LFNPEDTWHK FEGYGKEQYF VDPCKLLLTT AGINEHGDYA EFGIPATLLA NFLRENGIVP
EKCDLNSILF LLTPAEDMAK MHQLVAQINR FEQFVKEDAP LQVVLPTVYE ANKDRYKGYT
IQQLCLEMHN MYRELNVKEL QRCMFREAYF PEMKMLPQQA NTQYFRGECE YVELKEATGR
IAAEGALPYP PGVLCVIPGE AWTSQVTQYF LALEEGINQF PGFAPEIQGV YLEEVNGRTT
AFCYVLNESN