| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II1036 |
|---|
| Symbol | |
|---|
| ID | 6962347 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011313 |
|---|
| Strand | - |
|---|
| Start bp | 1132374 |
|---|
| End bp | 1133978 |
|---|
| Gene Length | 1605 bp |
|---|
| Protein Length | 534 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 643382284 |
|---|
| Product | putative mechanosensitive ion channel protein |
|---|
| Protein accession | YP_002265315 |
|---|
| Protein GI | 209809776 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTAAGA AATATGTAGC TTTGTTGCTA TTGATGGTGA GCTTTATTGC ACCAACGTAC
GCACAAAGCA TTGATGAAAT GAAAGTAACA CAGCAAAACT TACAAGAACG CTTAGTACAA
TTATCTGCGG CTGATCCTGC TGATAAGCTC TTTTTTGAAG ATGTACTTCG TCGAAAGAAT
GAAGAAATTA GAAACAATAT TTCTGAAAAA ATTCAAGATG AAACGAAAGC CCCTGCACTT
GTTGAAACCG TGCGCTTAGA AATGAAATTA GTAAATCAAC TATTGGCATA CAGTCAGAAA
GAGTTGATTC GTATTACTAA AGCATCAAGA AAAGCGAGCG GTGACGAGAA GGCTGACCTA
GAATTTGCGG CTCAAAAGCG CTTAGGTATG ATGGACCAAT ATTACGTTGA AGCTTTTGAA
ACGTTAGCTT GGGGTGAGTC GTTAAATATT GATTTTACAA ATGAAGAACA AAACATTTTA
AAAGATCTAG AAACTAGAGC TGACCTATTA TTTAATGTTA TTCATTATCT TGATTCACAA
CGAAATGATA TTGCTCAACG TCTTAAATTT GCTTCTCCTG AGCAGAAAGT AACGCTAAAG
CAAAATGCGG TGAACATGGC TGAGCGAATT TCATTGATGG TTGCAAGCTT AGAAGCAACG
ACGGCATTAA TGGAAGAAAA TAACGTTGAT ATTACAAAAT ATAAACAGCT TATCTTCTCA
ATTACTGGCG ATATTAATAG TGATGTATTA GACGTCAGCG TTGCTTATGG ATTAACTGAA
GAGTGGGCTA ACGGGTTTAA GGATTGGGCG ATTGAGAATG CGCCATCGTT GGTTTTAAAA
ACGCTAATCT TTATTATTAT TTTATGGGTA ACTCGAGTTA TTTCTCGTTT AGCTAGAAAA
GCGATAAAGA AAAGCGTGTC TCATTCTAAA ATGAAATTCA GTCATTTGAT GCAAGATTTC
TTTGTTTCAA TGGGCACGAA GCTAGTAACG TTAATTGGTA TTCTGATTGC GCTATCGCAA
GTTGGTATCA ATTTAGGACC ACTATTAACA GGCTTTGGTG TTGCTGGTGT GGTTATTGGT
TTTGCACTTA AAGATACATT ATCTAACTTT GCATCAGGCA TGATGATCTT AATTTATCGT
CCATTTGATG TGAATGATTT AGTTGAGATT GCAGGTATTA CGGGTAAAGT AAGCCACATG
AACCTAGTGT CGACTACTGT TAAAACAATT GATAATCAAC AGCTTGTTTT TCCGAACAAT
AAGATTTGGG GCGATGTTAT TAAGAATGTA ACGGCTGAGA CTGTACGACG TGTCGACATG
GTTTTTGGTA TTGGTTATCA AGATGATATT GAGAAAGCGA AAGCCATCTT TAATGATATC
TTAGCGAGTC ATCCTGCCGT ATTGAAATCA CCAGAACATA TGGTGAAATT GCATACTCTT
AATGAATCAT CAGTCGACTT TATTGTTCGC CCATGGGTGA AAACTGACGA TTATTGGGAT
GTGTATTGGG AAGTGACCGA AACCGTTAAG AAACGCTTTG ATGCTGAAGG CGTGAGCATT
CCGTTCCCAC AACGTGATGT GCATGTTTAT AAGCATGATG CTTAA
|
|---|
| Protein sequence | MIKKYVALLL LMVSFIAPTY AQSIDEMKVT QQNLQERLVQ LSAADPADKL FFEDVLRRKN
EEIRNNISEK IQDETKAPAL VETVRLEMKL VNQLLAYSQK ELIRITKASR KASGDEKADL
EFAAQKRLGM MDQYYVEAFE TLAWGESLNI DFTNEEQNIL KDLETRADLL FNVIHYLDSQ
RNDIAQRLKF ASPEQKVTLK QNAVNMAERI SLMVASLEAT TALMEENNVD ITKYKQLIFS
ITGDINSDVL DVSVAYGLTE EWANGFKDWA IENAPSLVLK TLIFIIILWV TRVISRLARK
AIKKSVSHSK MKFSHLMQDF FVSMGTKLVT LIGILIALSQ VGINLGPLLT GFGVAGVVIG
FALKDTLSNF ASGMMILIYR PFDVNDLVEI AGITGKVSHM NLVSTTVKTI DNQQLVFPNN
KIWGDVIKNV TAETVRRVDM VFGIGYQDDI EKAKAIFNDI LASHPAVLKS PEHMVKLHTL
NESSVDFIVR PWVKTDDYWD VYWEVTETVK KRFDAEGVSI PFPQRDVHVY KHDA
|
|---|
| |